Clostridium saccharobutylicum: CLSA_c17650
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Entry
CLSA_c17650 CDS
T02876
Symbol
recQ2
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
csb
Clostridium saccharobutylicum
Pathway
csb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLSA_c17650 (recQ2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csb03019
]
CLSA_c17650 (recQ2)
03400 DNA repair and recombination proteins [BR:
csb03400
]
CLSA_c17650 (recQ2)
Enzymes [BR:
csb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLSA_c17650 (recQ2)
Messenger RNA biogenesis [BR:
csb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLSA_c17650 (recQ2)
DNA repair and recombination proteins [BR:
csb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CLSA_c17650 (recQ2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HRDC
RQC
DEAD
Helicase_C
HTH_40
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AGX42759
UniProt:
U5MPM2
LinkDB
All DBs
Position
1968257..1970710
Genome browser
AA seq
817 aa
AA seq
DB search
MSNSAIDFLEKYYGYKSFRRGQESIINSIIDGKDVLAIMPTGGGKSICYQIPALMLEGMT
IVISPLISLMKDQVDTLKDMGIKGELINSTLSASEENEVINNIENGNIKILYIAPERLES
MGFLDVISRCNISQIAVDEAHCISQWGHDFRSSYKRISYFIDLLKDRPIITAFTATASEE
VREDIINLLRLKDPKVFVTGFDRENLAINVIKGGSKKSYLYNYIENNKDVSGIIYAATRK
EVDNIYEDLSSRGYNVTHYHAGLSEEARRTNQEGFIYDRATIMIATNAFGMGIDKPNIRY
VIHYNMPRNIESYYQEIGRAGRDGEKSECTLLFAPQDVQVQKYLIEHSIENEERKINQYR
KLQQMMDFVYSNECYRKYILAYFGEEYDKECNNCSNCLSEGDVVDKTIEAQKVLSCIYRM
KHKFGTGMLVDVLRGSKNKKVLQFKFNELSTYGLMKDYSAEDLKNFINTLISQGYISVIE
GTYPVLTLNERSRNVLVSKEKVQLKEFKVEKKVREDNELYEILRGIRQELAKENNVPPYI
IFGDVTLKEMAIKYPTNKETMLNITGVGEVKYSKYGEAFEDAIKEFVEEHNIVINNDIEI
ESKNEENDKKDNDLKLEVTTDSELYDKLYKARSEFAKKEKSMFPQMIMSMNTLKEISGRY
PINLEQLKDISGMGPKKISSYGEKIIEIVNDYVIQNNIQVNWCEKKRKKVIIDGETRESN
QISIDMLKEGINIHEVSEKIELSISTILGYVTDYIKEVGDNVFDINLHEFYNDEEEELIQ
NVCEKLGDDKISVLKKELPSYIKYESIRAVILKKYVS
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgagtaactcagcaatagattttttagaaaaatactatggatataagtcttttagaaga
gggcaggagagtataattaatagcataatagatggaaaagatgtactagctattatgcca
acaggtggaggtaaatctatttgttaccagatacctgctttaatgcttgaaggcatgact
atagtaatttcacctcttatatctcttatgaaagatcaagttgatactttgaaagatatg
ggtattaaaggagaactaataaatagtactttaagtgcatcggaagaaaatgaagtaata
aataatattgaaaatggaaatattaaaattttgtatatagctccagaaagacttgaatca
atggggttcttagatgttatttcaagatgcaatatttctcaaattgcagtagatgaagca
cattgtatatctcaatggggacatgattttagatcaagttacaaaaggatatcttatttt
attgatttacttaaagatagaccaataataacagcatttacagcaacagcatcagaagaa
gtaagggaagatataataaatctccttagattaaaggatccaaaggtttttgtaacagga
tttgatagagagaatttggccataaatgtaattaaaggcggaagcaagaaaagctattta
tataactatattgaaaataacaaagatgtttcagggataatttatgcagcaacaagaaaa
gaagttgataatatatatgaagatttatcatctagaggatataatgtaactcattatcat
gcaggattgtctgaagaagcaagaagaactaatcaagaaggatttatatatgatagagca
actataatgatagcaaccaatgcttttggtatgggaatcgataaacctaatataagatat
gtaattcattataatatgcctagaaacatagaaagttattatcaagagattggtagagca
ggtagagatggggaaaagagtgaatgtacattattatttgctccacaggatgttcaagtt
caaaaatatttaatagagcattctatagaaaatgaagagagaaaaatcaatcaatataga
aaacttcaacaaatgatggattttgtatatagcaatgagtgttatagaaaatacatttta
gcttactttggagaagaatatgataaagagtgtaataactgtagtaattgtctaagtgaa
ggtgatgtagtagataagactatagaagcacaaaaagttctttcgtgtatatatagaatg
aaacataaatttggaactggaatgcttgtagatgttcttagaggttctaagaataaaaaa
gttcttcaattcaaatttaatgagctttcgacttatggattaatgaaagattattcagca
gaagatcttaaaaattttattaatacgctcatttctcaaggttatataagtgtaattgaa
ggtacttatccagttctaactttaaatgaacgatctagaaatgtcttagtttctaaagaa
aaggtacaattgaaagaatttaaggttgaaaagaaagttagagaagataatgaattgtat
gaaatccttagaggtataagacaagagttagcaaaagaaaataatgttcctccatacata
atattcggtgatgttaccctaaaagaaatggctataaaatatccaactaataaagaaact
atgcttaacattacaggggtaggagaagtcaagtatagtaaatatggtgaagcatttgaa
gatgccataaaagagtttgtggaggaacataatattgtaattaataatgatattgaaatt
gaatctaaaaatgaagagaatgataagaaagataatgatttaaaattagaagtaacaaca
gacagcgaattatatgataagttatataaagcaagaagtgaatttgcaaagaaagaaaaa
agcatgttccctcaaatgattatgtctatgaatactttaaaagaaataagtggaaggtat
ccaataaatttagagcagctaaaagatattagtggcatgggacctaaaaagataagttct
tatggggaaaagataatagaaatagtaaatgattatgtaattcaaaataatatccaagtt
aattggtgtgaaaaaaagagaaagaaagtaattattgatggagaaacacgtgaaagcaat
caaatttctatagatatgcttaaagaaggtataaatattcatgaagtatcagaaaaaata
gaactttcaatatctactattttgggatatgtaacagactatattaaggaagttggcgat
aatgtatttgatattaatttacatgaattctataatgatgaagaggaagaattaatacaa
aatgtttgcgaaaaattaggcgatgataaaataagtgtgttaaaaaaggaacttccttca
tatatcaagtacgaaagtataagagcagtaatattaaaaaaatatgttagctag
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