Clostridium saccharobutylicum: CLSA_c39930
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Entry
CLSA_c39930 CDS
T02876
Symbol
recJ2
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
csb
Clostridium saccharobutylicum
Pathway
csb03410
Base excision repair
csb03430
Mismatch repair
csb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CLSA_c39930 (recJ2)
03430 Mismatch repair
CLSA_c39930 (recJ2)
03440 Homologous recombination
CLSA_c39930 (recJ2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csb03400
]
CLSA_c39930 (recJ2)
DNA repair and recombination proteins [BR:
csb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CLSA_c39930 (recJ2)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CLSA_c39930 (recJ2)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLSA_c39930 (recJ2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
AGX44953
UniProt:
U5MWQ6
LinkDB
All DBs
Position
complement(4411401..4413164)
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AA seq
587 aa
AA seq
DB search
MAERWFIKNKKADYKYMAAKYGITELMSKLIVNRDIVDDEMIKSYINPSIDKLRNPREMK
DIEKAVEILRNKIDSNKKIRIVGDYDVDGVMSVYILYTALKRCNANVDYEIPDRIKDGYG
INKNIITEAKKDGVDTILTCDNGISAIEPIKYAKELGMTVIVTDHHDIPFIEKNENRIFI
KSEADAIINPKQNECKYKFKQLCGAGVAFKLVEVLYDELSIDKKECYDLIEFLAIATVCD
VVDLIDENRIFVKKGLEKINNTTNLGLQELIIECEMQEKKLSVYHLGFIIGPCINASGRL
DSAKKGLKLLLANEESEATALAKELVKLNEERKDMTMKGVEDAVEIVESNGMINDKVFVI
YIPHIHESLAGIIAGRIREKYNVPTLILTKSENGAKGSGRSIEECNMFEELVKCKDLLDN
FGGHPMAAGFSLQEKNIDEFRRRLNENTILKDDDLLRKVTIDSVLPLDSIDYELIEDLER
LEPFGKANSKPLFGEKNINVVKASILGKNRNVLKLKLKTTYGKIIDAIYFSDIEEFEEII
TEKYGREELQKLYDGVYNDVKLDIVFYPSINEYNGNISIQIVIQNYR
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaagatggtttattaagaataaaaaagcagactacaaatatatggctgctaaa
tatggtattaccgaacttatgagcaagttaattgtaaatagagatattgttgatgatgaa
atgataaaaagttacataaatccatcaattgataaacttcgtaatccaagagaaatgaag
gatatagaaaaagcagtagagatactaagaaataaaatagactcaaataaaaagattaga
atcgttggcgattatgacgtggatggagttatgagtgtttatattttatatacagcatta
aaaagatgcaacgcaaatgtagattatgaaataccagatagaattaaagatgggtacgga
ataaataaaaatataataaccgaagcaaaaaaagacggagtagatactatattgacttgt
gataatggtatatcagctatagaacctataaaatatgctaaggaattaggcatgactgta
atagttacagatcatcatgatataccatttattgagaaaaatgaaaataggatatttata
aaatctgaggcagatgcaataataaatccaaagcaaaatgaatgtaagtataaattcaag
caattgtgcggagcgggagtagcgtttaagcttgtagaagtactttacgatgagcttagc
atagataaaaaagaatgttatgatcttatagaatttctagcaattgcaactgtatgtgat
gtcgtagatttaatagatgaaaacagaatttttgttaaaaaaggattagaaaaaataaat
aatactactaatttaggtttacaagaattgataatagagtgtgagatgcaagaaaaaaag
ttatcagtttatcatttggggtttataataggaccgtgtataaatgcatcaggaaggctt
gatagtgcaaaaaaaggattgaaattattattagcaaatgaagagtcagaagcaactgca
ttggcaaaagaattagttaagcttaatgaggaaagaaaagatatgacaatgaagggcgtt
gaagatgcagtagaaattgttgagagtaatggaatgataaatgataaggtgtttgttatt
tatattcctcatatccatgaaagtttagctggaataatagcaggaagaataagagaaaag
tataatgtacctactttaatattaactaaatctgaaaatggtgcaaaaggttctggaagg
tcaatagaagaatgcaatatgtttgaagaacttgtgaaatgcaaagatttattggataac
tttggggggcatccaatggcagcaggattttcacttcaagaaaagaatatagatgagttt
agaagaagattaaatgaaaatacaattttaaaagatgatgatttattaagaaaagttact
atagattctgtacttccactagattcgatagactatgaattgatagaagatttagaaagg
ttagagccttttggaaaagcaaattctaaacctttatttggggaaaaaaatattaatgta
gttaaagcttctatactaggtaaaaatagaaatgtattgaaacttaaattaaaaactact
tatggtaagattatagatgctatttattttagtgatattgaagaatttgaagaaataatt
actgaaaaatatggaagagaagaattgcaaaaactttatgatggagtatataatgacgtt
aaattagatatagtattttatccgagtataaatgaatataatggtaatattagtattcag
attgtaattcagaattatagataa
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