Clostridium saccharobutylicum: CLSA_c42920
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Entry
CLSA_c42920 CDS
T02876
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
csb
Clostridium saccharobutylicum
Pathway
csb03030
DNA replication
csb03430
Mismatch repair
csb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLSA_c42920 (dnaE)
03430 Mismatch repair
CLSA_c42920 (dnaE)
03440 Homologous recombination
CLSA_c42920 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csb03032
]
CLSA_c42920 (dnaE)
03400 DNA repair and recombination proteins [BR:
csb03400
]
CLSA_c42920 (dnaE)
Enzymes [BR:
csb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CLSA_c42920 (dnaE)
DNA replication proteins [BR:
csb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CLSA_c42920 (dnaE)
DNA repair and recombination proteins [BR:
csb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CLSA_c42920 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AGX45252
UniProt:
U5N0D4
LinkDB
All DBs
Position
complement(4817246..4820875)
Genome browser
AA seq
1209 aa
AA seq
DB search
MELLFYFICITLKLEVRTLEEKQFCHLHLHTEYSLLDGSGKVPNIMKRAKELGMKSIAIT
DHGVLYGLVDFYKAAKENGIKPILGCEVYVVAKSMKIKQPDKDNANHHLVLLVKNEVGYE
NLMKIVSTASIDGFYYKPRVDHEYLRTHSEGLIALSACLGGEVQSYHLKGNYEKAKEVAL
IYKEIFKDDFYIEVQNHGMEEQKKVNEENIRLSRETGIPLVATNDVHYINLEDSKSHDVL
MCIQTAKTIDDPNRRRYPSDQFYLKSAEEMWDMFSYIPEALENTIKIAEQCNFDYKFHES
KLPRFPLEQGQDPYEYLRNTCYRGLIERYDVFEELLDRPLNYDEINKIKESNEKAKEYVD
RLEYELGIINQMGYVDYFLIVWDFIRFSYESGIPTGPGRGSAAGSIVAFTLGITKIDPIK
YSLIFERFLNPERVSMPDIDSDFCYERRQEVIDYVVEKYGEDCVSQIITFGTMAARLCIR
DVGRAMNYSYSEVDKIAKMIPTMLGITINKALELNPELKSAYDNDDRIKTLIDVSMDLEG
LPRHSSTHAAGVVIASKPLVEYVPLQKNDEMIVTQFGMTTLEELGLLKMDFLGLRTLTVM
NDAVNMVKANRGIEIDLDKIDFADKEVYKMIGEGKTAGVFQLESAGMTSFMKELKPDNLE
DIIAGISLYRPGPMAEIPRYIEGKRNAETVQYETPELEDILNVTYGVMVYQEQVMEIVRK
LAGYSMGRSDMVRRAMSKKKHKVMEEERKNFIHGIIENGEVVVPGCIRNGISEEAANKIF
DSMMDFASYAFNKSHAAAYAVVGYQTAYLMRYCPVEMIAAMLNSIMGINEKVAHYIGIAE
ELGIQVLPPDINESFSKFTVKGDKIRFGLAAIKNVGANVVESIVKARENKGTFESLVDFI
NKMDPSSINKRAVECLIKAGALDNFKVFRSKMLAVHEKLIDNISSDKRRNIDGQISLFAT
EELKNPEVRYPEIKEFNKKNLLAMEKEMTGLYITGHPLDDYVQSLKMQTTNEISDAFLVQ
ETLDDSLENDIGEIGIFDDKNTLQDNDRVILGGILAQVNQKVTRNNTIMAFLRLEDLTGV
IEVIVFPKTLDKVKNLCMTDNLVIVKGRLSLKEDEPPKLICESMEPLEKINTSKVYLRAD
DQIHAKEISKKLKELLDEQYKGDTPIYICAIKEKQKFRVSRDRWITLDNDALDILKESFG
EENVKIQDL
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
ttggaattgttattttattttatatgtataactttaaaattggaggtgagaacattggaa
gaaaaacaattttgtcatttgcatctacatacagaatatagcttattggatggttcgggc
aaggtacctaatataatgaagagagcaaaagaattagggatgaagagcattgcaataaca
gatcatggagtcttatatggactggtggatttttataaagcagctaaggaaaatggaata
aaaccaattttaggttgtgaagtttatgttgttgctaaatctatgaaaattaagcaacca
gataaggataatgcaaatcatcatcttgttttgcttgtaaaaaatgaagtcggatatgaa
aatttaatgaaaatagtatcaactgcatctatagatggcttttattataaaccaagagtt
gatcatgaatatcttagaacacatagtgaaggattgattgctttaagtgcttgtttagga
ggagaagtacaatcttatcaccttaaaggcaattatgaaaaagctaaagaagtagcttta
atatataaagagatattcaaagatgatttttatattgaagttcaaaaccatggaatggaa
gagcaaaagaaggtaaatgaagaaaatataagattatctagagaaacaggaataccatta
gttgctactaatgatgtccattatataaatctagaagattctaaatcacatgatgtctta
atgtgcatacaaacagctaagacgatagatgatcctaatagaagaagatatccttcagat
cagttttatttaaagtcagcagaggaaatgtgggatatgttctcgtacataccagaagca
ttagaaaatactatcaaaattgcagaacagtgtaattttgattataaatttcatgaatca
aaattaccaaggtttccactggaacaagggcaagatccatatgaatatcttagaaacaca
tgttatagaggtttaatagaacgatatgatgtttttgaagaattattggatagaccttta
aattacgatgaaattaataaaataaaggaatctaatgaaaaggcaaaagaatatgtagat
agattagaatatgaacttggaataataaaccaaatggggtatgttgattatttcttaatt
gtttgggattttattagattttcatatgaaagcggaataccaactggaccaggtagaggt
tctgcagcaggatcaatagtagcatttactttaggaattactaagatagatccaataaaa
tatagtttaatctttgaacgtttcttaaatccagaaagagtgtctatgccagatatagat
agtgatttctgttatgaaagaagacaagaggtaattgattatgttgtagaaaagtatggt
gaagactgtgtatctcaaataataacatttggtactatggcagctagattatgtattaga
gatgtgggaagagctatgaattatagctattcagaagttgataagatagcaaaaatgata
ccaaccatgcttggaataactataaataaagctctagaacttaatccagagcttaaatca
gcgtatgataatgatgataggataaaaacactaatagatgtttcgatggacttagaagga
ctgccaaggcattcctcaacacatgcagcaggtgtagttatcgcatcaaagccattagtt
gaatatgttccacttcaaaagaacgatgaaatgatagtaactcaatttggaatgacaact
ttagaagagttaggattgcttaagatggacttcttaggtcttagaacattaacagttatg
aatgatgctgttaatatggttaaggctaatagggggatagagatagaccttgataaaata
gactttgcagataaagaagtatataagatgattggtgaaggaaagacagcaggtgtattc
caattagaatcggcaggtatgacttcgttcatgaaagaattaaaacctgataatttggaa
gatattattgcaggaatttctttatatagaccaggtcctatggcggaaataccaagatat
atagaaggaaagagaaatgcagagacagttcagtatgaaacacctgaattggaagatata
cttaatgttacgtatggggtaatggtttatcaggaacaagtaatggaaattgttagaaaa
ctagctggatactccatgggacgaagtgatatggttagaagagctatgtctaagaagaaa
cacaaggtcatggaagaagaaagaaaaaatttcattcatggcattattgaaaatggagaa
gttgtagttcctggttgtataagaaatggcattagtgaagaggcagcaaacaaaatattt
gattctatgatggactttgcatcgtatgcgtttaataaatcccatgcagctgcatatgca
gttgtaggatatcaaacagcgtatttaatgaggtactgtccagtagaaatgattgcagct
atgcttaattcaattatgggaataaacgaaaaagtggcacattatattggaattgctgaa
gaattaggaatacaagtgttaccacctgatataaacgaaagtttctctaaatttactgtt
aagggagataaaatcaggtttgggctggcggcaataaaaaatgttggagctaatgtggta
gaaagtatagtaaaagcaagagagaataagggaacatttgaatcattggttgattttata
aataaaatggatccttcatcaataaacaaacgtgcggtagaatgtttaataaaagcagga
gctttagataattttaaagtttttagatcaaaaatgctagcggttcatgaaaagctgatt
gataatatatcaagtgataaaagaagaaatattgatggacaaataagcctttttgctact
gaggaattaaaaaatccagaagttagatatccagaaataaaggaatttaataagaaaaac
ctattagcaatggagaaagaaatgactggactttatattacaggtcatccgttagatgat
tatgttcaaagtctaaaaatgcagactactaatgaaatatcagatgcatttttagttcaa
gaaactcttgatgattcattagaaaatgatataggtgaaattggaatttttgatgataaa
aatactcttcaagataatgatagagtaattcttggaggaatacttgcacaggttaaccaa
aaggtaacaagaaataatacaataatggcatttctaaggcttgaagatttgacaggagta
atagaagttattgtatttcctaagacattagataaagttaaaaatttatgcatgactgat
aatttggtaatagtaaaaggtagactaagcttaaaagaagatgaaccaccaaagcttata
tgtgagagcatggaaccattggaaaagattaatacatcaaaggtatatttaagggcagat
gaccaaatccacgctaaggaaattagtaaaaaacttaaggaattgctagatgaacaatat
aaaggtgatacgcctatatatatatgtgcaattaaggaaaaacaaaaatttagagtttca
agagatagatggataacattggataatgatgcactagatatattaaaggaaagctttgga
gaggaaaatgtaaaaatacaagatttataa
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