Clostridium saccharobutylicum: CLSA_c44660
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Entry
CLSA_c44660 CDS
T02876
Symbol
cshA2
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
csb
Clostridium saccharobutylicum
Pathway
csb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLSA_c44660 (cshA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csb03019
]
CLSA_c44660 (cshA2)
03009 Ribosome biogenesis [BR:
csb03009
]
CLSA_c44660 (cshA2)
Enzymes [BR:
csb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLSA_c44660 (cshA2)
Messenger RNA biogenesis [BR:
csb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLSA_c44660 (cshA2)
Ribosome biogenesis [BR:
csb03009
]
Prokaryotic type
rRNA helicases
CLSA_c44660 (cshA2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DeaD_dimer
Flavi_DEAD
AAA_30
Cas3-like_C_2
Chorismate_bind_2
Chorismate_bind
Motif
Other DBs
NCBI-ProteinID:
AGX45402
UniProt:
U5N0X2
LinkDB
All DBs
Position
5018178..5019752
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AA seq
524 aa
AA seq
DB search
MSDNQFSTLGLKESVVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSL
PIITKMSDKKGIKALILAPTRELAVQVNDEIQRLSKYENLEVLSVYGGDSIDRQIKALRR
GVDIVVGTPGRMLDLIKRKCLHLDSVEFLVLDEADEMLNMGFIDDIESILSHTPAERQTL
LFSATMPDPIAKLAKRYMKPDAKLVSIKRSSLTVSKIEQSYFMINNKHRLEALCRLLDLD
NPNSAIIFCKTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLSLLIATD
VAARGIDVDGVTHVFNYDLPQDVESYVHRIGRTGRANREGTAYSLVTPKDFAMLKQIQNV
TKSSITQKPVPTAEEIKNKKFKDMVSEVEEAIKAGELTKFIPSAMELAENHDPISIIAGL
MKIKFDNESVFDYSANKLDAPKKEDVRLFFSVGKRDGLTPKVLINYIKDRTRVNASTIGQ
IDLMENFSFVSVDESISKKILDKCPGGKINKKKVNVEVANKRKR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgagtgataatcaattttctactttaggtcttaaagagagtgttgtgaaagcaatatca
gacctaggttttactaaaccatctcaaattcaagaacaaagtattcctgtaacattaagt
ggtgcagatcttataggtcaagcgcaaactggtacaggtaaaacagctgcttacagctta
ccaataatcactaagatgagtgataaaaagggtattaaagctcttatattagctccaact
agagagcttgccgttcaagttaatgacgaaatccaaagactttctaaatatgaaaattta
gaagtattatctgtttacggtggagattcaattgacagacaaatcaaagcacttagaaga
ggtgtagatattgttgttggtactccaggaagaatgttagaccttattaagagaaagtgt
cttcatttagattctgtagagtttctagtattagatgaagctgacgaaatgcttaacatg
ggatttattgacgatatagaatcaatcctaagccatacaccagctgaaagacaaacttta
ttattctcagcaacaatgccagatccaatagctaagcttgctaagagatatatgaaacca
gacgctaaacttgttagcattaaaagaagttcattaacagtatctaagattgaacaaagt
tatttcatgatcaacaacaagcatagattagaagcactttgcagattattagacttagat
aacccaaattctgctataattttctgtaaaacaaaaagaggtgttgatgaattagttcaa
gagttgcaatctaagggatatatggttgaaggaatgcacggtgatatgacacaagctcat
agattaactactttgaacaaatttaaagaaggtactcttagtttattaatagctacagat
gttgcagctagaggaatagatgttgatggagttactcacgtattcaactatgatttacca
caagatgttgaatcatatgtacatagaatcggtagaactggtagagctaatagagaaggt
actgcttattcattagtaacaccaaaagattttgcaatgcttaagcaaattcaaaatgtt
actaaaagttcaataacacaaaaaccagttccaactgcggaagaaatcaaaaacaagaaa
tttaaagatatggtttcagaagttgaagaagctattaaggctggagaacttactaagttt
attccaagtgcaatggaattagctgaaaatcatgatccaatctcaatcattgctggttta
atgaagattaaatttgataatgaaagtgtattcgattatagcgctaacaaattagatgca
ccaaaaaaagaagatgttcgtttattcttctctgttggaaaaagagatggattaacacca
aaagtattaattaattatattaaagacagaactagagttaatgcttcaactataggccaa
atagatcttatggaaaacttctcatttgtaagtgtcgatgaaagcatatctaaaaagatt
ttagataaatgcccaggtggaaaaatcaacaaaaagaaagttaatgttgaagttgcaaat
aaacgtaagagataa
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