Caldicellulosiruptor saccharolyticus: Csac_1321
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Entry
Csac_1321 CDS
T00506
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
csc
Caldicellulosiruptor saccharolyticus
Pathway
csc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Csac_1321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csc03019
]
Csac_1321
03016 Transfer RNA biogenesis [BR:
csc03016
]
Csac_1321
Enzymes [BR:
csc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Csac_1321
Messenger RNA biogenesis [BR:
csc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Csac_1321
Transfer RNA biogenesis [BR:
csc03016
]
Prokaryotic type
tRNA degradation factors
Csac_1321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1_RRP5
OB_Dis3
Rho_RNA_bind
RNase_II_C_S1
WHD_TBPIP
Motif
Other DBs
NCBI-ProteinID:
ABP66923
UniProt:
A4XJ38
LinkDB
All DBs
Position
1485672..1487804
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AA seq
710 aa
AA seq
DB search
MKKARFEEKKQEIWGLIREESYHPMTFSEILDILGWNEKDELLLKRILDELEQEGKIVRT
KRGRYGLAEEMNLFVGVLEVNPRGFGFLVPDNPNIPDIYISAENMNGAMHGDRVLVKALS
LPVEGKRIEGYVERILKRGITKVVGRYEDSKNFGFVIPDDQRITYDIYIPKSGKNKAKTG
QKVVVEITRYPEKRRNPEGRIIEILGYENAKGVDILSIIKKYELEEEFPKEVLKEVENIP
DVVLEEEIEGRVDLRDWTIFTIDGEDAKDFDDAVSIKKLPNGNYLLGVHIADVSHYVKPN
THLDREAFRRGTSVYLVDRVIPMLPFKLSNGICSLNPNVDRLTFSVLMEIDKNGNVVKHD
IFESVIRSKERMTYTNVTKILKEEDKDLLKRYEHIREDLELMRELALILREKRMKRGALD
FDFDETKVILDKNGRPIDIRRYELTISNKIIEEFMLICNETVANHFFWLNVPFLYRVHEE
PDIEKIYQFAEFIYNMGYVLKGISNKIHPKALQAILEQSRGTPEERVIHTLCLRSLKKAR
YCEENLGHFGLSTDYYCHFTSPIRRYPDLVIHRIMKDVLKGKMTEKKAERLRRKMPEIAK
WTSQREQIAEEAERETVELKKVEFMTDKIGQVFEGIISNVTPFGFFVELENTIEGLVRVS
SLEDDYYVFNEKTYQLIGEKSKKVYKIGDKVKVRVISANIALRQIEFTIV
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaaagcaagatttgaagagaaaaaacaagagatttggggtttaatccgcgaagaa
agctatcatccaatgacgttttctgaaattttagatatcttaggttggaatgaaaaagac
gaacttttactgaagagaattcttgatgagcttgaacaggaagggaaaattgtcaggaca
aagcgcggaagatatggccttgctgaggagatgaacctttttgttggtgtattagaagta
aatccgcgcgggtttggatttttggttcctgacaatcctaatatccctgacatctatatc
tcagcagagaacatgaacggggctatgcatggcgatagagtacttgtcaaagcactttct
ttacctgttgaaggcaaaagaattgagggatatgtggaaagaattttaaaaagaggaatt
acaaaggttgttggaaggtatgaggatagtaaaaactttggatttgttattccagatgac
cagcgaataacttatgacatctatattccaaagagcgggaaaaacaaagcaaagacaggt
caaaaggttgtagttgaaattacaagatatcctgaaaagagaaggaaccctgaaggaaga
atcattgagattttgggatatgaaaatgcaaaaggagtagatatactatcaatcatcaaa
aagtacgaattagaagaagaatttccaaaagaagtcttgaaagaggttgaaaatatccca
gatgttgtcttagaagaggaaattgaaggaagagttgatttaagagactggacaatcttt
acaattgacggtgaggatgcaaaggactttgacgatgcagtgtcaatcaaaaaacttcca
aacggcaactatctactaggtgttcacattgcagatgtcagtcattatgtaaagccaaat
acgcaccttgacagagaagctttcagacgtggtacaagcgtctaccttgttgacagggta
attccaatgcttcctttcaagctgtcaaacgggatttgctctctcaacccaaatgtggat
aggcttaccttttctgttctaatggaaatagacaaaaatggcaatgtggtaaagcacgat
atatttgaaagtgttataagaagcaaggagagaatgacatacacaaatgttacaaagata
cttaaagaagaggacaaagaccttctaaaaaggtatgaacacataagagaagacttggag
ctgatgcgcgaacttgcactaattttgcgtgaaaagcgcatgaaacgaggggctttggac
tttgactttgacgaaacaaaggtaatccttgacaaaaatggcagaccaattgatatcaga
aggtatgagctcacaatctcaaacaaaataattgaagagtttatgcttatctgcaatgag
acagttgcaaatcacttcttctggctaaatgttccatttttgtacagggttcatgaagag
ccagacatagaaaagatttaccagtttgctgagtttatatacaacatggggtatgttcta
aaaggaatttccaacaagattcacccaaaagcgctgcaggcaatcttagagcaaagcagg
ggcacaccagaagaaagggtgattcacacactttgtcttcgctcacttaaaaaagcaaga
tattgtgaagaaaatcttggacactttggtctttcaacagattattactgccatttcaca
tcacctattagaaggtatcctgaccttgtaattcacaggattatgaaagatgttctaaaa
ggaaagatgacagaaaagaaagcagaaagacttcgccgtaagatgcctgagatagcaaag
tggacatcacagcgagagcagatagctgaagaggcagaaagagaaacagttgaactcaag
aaagtagagtttatgacagacaagatcggtcaggtttttgaaggtattatttcaaatgtc
acaccttttggcttttttgttgagcttgaaaacactatagaaggacttgtaagagtgagt
tctttagaggatgattattatgtctttaacgagaagacatatcagctaataggagaaaaa
tcaaaaaaggtatataagataggagacaaggtaaaagtaagggtaatttccgcaaatata
gctttgaggcagatagagtttacaattgtctga
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