Caldicellulosiruptor saccharolyticus: Csac_2044
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Entry
Csac_2044 CDS
T00506
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
csc
Caldicellulosiruptor saccharolyticus
Pathway
csc02024
Quorum sensing
csc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Csac_2044
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Csac_2044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csc03019
]
Csac_2044
03036 Chromosome and associated proteins [BR:
csc03036
]
Csac_2044
Messenger RNA biogenesis [BR:
csc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Csac_2044
Chromosome and associated proteins [BR:
csc03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
Csac_2044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
LSM
Pox_A32
Motif
Other DBs
NCBI-ProteinID:
ABP67629
UniProt:
A4XL44
LinkDB
All DBs
Position
complement(2188963..2189262)
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AA seq
99 aa
AA seq
DB search
MAKGNLNLQDLFLNQLRKEKVNVTIFLLSGFQLKGVIKGFDNFTLVVETENNKQQLIYKH
AISSILPSKPINYMAQVQNSQVQNTASQQSNNNQNQESK
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaggaaatttgaacttgcaggatttatttttaaaccagcttcgaaaagaaaaa
gtcaacgttacaatctttttactgagcggattccaattgaaaggagttatcaaaggtttt
gataactttacattggtggtagagacagaaaataacaaacagcagctcatttacaaacat
gcaatttcttctattctaccatcaaagccaataaactacatggctcaagttcaaaactca
caagtgcaaaacacagcttctcagcaaagtaacaataaccaaaatcaagagtcaaaataa
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