KEGG   Caldicellulosiruptor saccharolyticus: Csac_2044
Entry
Csac_2044         CDS       T00506                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
csc  Caldicellulosiruptor saccharolyticus
Pathway
csc02024  Quorum sensing
csc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Csac_2044
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Csac_2044
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csc03019]
    Csac_2044
   03036 Chromosome and associated proteins [BR:csc03036]
    Csac_2044
Messenger RNA biogenesis [BR:csc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Csac_2044
Chromosome and associated proteins [BR:csc03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    Csac_2044
SSDB
Motif
Pfam: Hfq Hfq_1 LSM Pox_A32
Other DBs
NCBI-ProteinID: ABP67629
UniProt: A4XL44
LinkDB
Position
complement(2188963..2189262)
AA seq 99 aa
MAKGNLNLQDLFLNQLRKEKVNVTIFLLSGFQLKGVIKGFDNFTLVVETENNKQQLIYKH
AISSILPSKPINYMAQVQNSQVQNTASQQSNNNQNQESK
NT seq 300 nt   +upstreamnt  +downstreamnt
gtggcaaaaggaaatttgaacttgcaggatttatttttaaaccagcttcgaaaagaaaaa
gtcaacgttacaatctttttactgagcggattccaattgaaaggagttatcaaaggtttt
gataactttacattggtggtagagacagaaaataacaaacagcagctcatttacaaacat
gcaatttcttctattctaccatcaaagccaataaactacatggctcaagttcaaaactca
caagtgcaaaacacagcttctcagcaaagtaacaataaccaaaatcaagagtcaaaataa

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