Clostridium scindens: HDCHBGLK_00345
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Entry
HDCHBGLK_00345 CDS
T06591
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
csci
Clostridium scindens
Pathway
csci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HDCHBGLK_00345 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csci03019
]
HDCHBGLK_00345 (cshA)
03009 Ribosome biogenesis [BR:
csci03009
]
HDCHBGLK_00345 (cshA)
Enzymes [BR:
csci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HDCHBGLK_00345 (cshA)
Messenger RNA biogenesis [BR:
csci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HDCHBGLK_00345 (cshA)
Ribosome biogenesis [BR:
csci03009
]
Prokaryotic type
rRNA helicases
HDCHBGLK_00345 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
AAA_30
Hyccin
CMS1
Flavi_DEAD
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QBF72998
UniProt:
B0NA62
LinkDB
All DBs
Position
complement(336768..338348)
Genome browser
AA seq
526 aa
AA seq
DB search
MEEARFEDLGLCPEIMKAVKNMGFEEASPIQAKAIPAMLEGKDIIGQAQTGTGKTAAFGI
PLLEKIDPKNKKLQAIVLCPTRELAIQVAEEIRNLAKYMHAIKVLPIYGGQEIVKQIRSL
KSGTQLIIGTPGRVMDHMRRKTVKMENVHTVVLDEADEMLNMGFREDIETILEGVPEERQ
TVLFSATMPKPILDITKRFQKNAELIKVTKKELTVPNIEQFYYEVKPKNKEEVLSRLLDI
YNPKLSVIFCNTKKQVDLLVNGLLGRGYFAAGLHGDMKQAQRDRVMDGFRKGKTEILVAT
DVAARGIDVEEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVTGKEVYKLKEIQR
YCKTKIYAQKVPSLDDVANTKMDKLMETINRIIEEEDLTTYFQMIQAEVNDSDYTSMDIA
AALLKLCSGTKEEDGEDMFEDTGAEEPGMVRLFINIGKKHKAKPGDILGALAGESGLPGK
VVGTIDMYDKYTFVEVPREYARDILNAMDHAKIKGKSVAVEPANQK
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagcaagatttgaagatctgggattatgcccggagattatgaaagcagtaaag
aacatgggatttgaagaggcgtcaccgattcaggcgaaggcgattccggctatgctggag
ggaaaagacatcatcggccaggctcagaccggaacaggaaagacggcggcatttggaatt
cccctgctggaaaagatagatcccaagaataagaagttacaggccatcgtcctgtgccct
accagagaactggctatccaggtggcggaagaaatccggaatctggccaaatatatgcat
gcgatcaaggtgcttccgatctatggaggacaggagatcgttaagcagatccgttcatta
aaaagcggtacgcagctgattatcggaacacccggacgtgtgatggaccatatgagaaga
aagacggtaaagatggagaatgtccataccgtagtcctggacgaggcagatgagatgctg
aacatgggatttagggaagatattgagacgattctggaaggcgtgcccgaagagcgtcag
accgttcttttctctgcgaccatgccaaagccgattctggatatcactaagagattccag
aagaacgctgaattgatcaaggttaccaaaaaagaactgacggttccaaatattgaacag
ttctattacgaagtaaagccgaagaataaagaggaagtgctctccaggcttctcgacatt
tacaatccgaaactttccgttatcttttgtaatacgaagaaacaggttgacctgctggta
aatgggcttctgggaagaggctattttgcggccggacttcacggagatatgaagcaggcc
cagagagaccgcgtcatggatgggttccgaaaagggaagacagagattctggtagctaca
gatgtggcggccaggggcattgacgttgaagaagtagaggcagtattcaattatgatctt
ccgcaggatgatgagtattacgttcatagaatcggaaggacagggcgtgcaggacgtgtc
ggccgttccttctcattcgttaccggcaaggaagtatacaagctgaaggaaatccagaga
tactgcaagactaagatatatgcacagaaagtgccgtctcttgacgatgttgccaatact
aagatggataagctgatggaaaccatcaaccggattatcgaggaagaggatcttaccacg
tatttccagatgattcaggcggaagtaaacgattcagactataccagcatggatattgcc
gccgcgcttttgaaactgtgttcaggaaccaaagaagaagacggtgaagatatgttcgag
gatacaggagcagaggagccaggaatggtacgattgttcatcaatattggaaaaaagcat
aaagcaaagccgggcgatattctgggcgcgctggcaggagagagcggattgccgggcaag
gtagtgggaaccatcgatatgtatgataagtataccttcgtagaggtgccaagagaatac
gccagggatatcctgaatgcgatggatcatgccaagatcaaaggaaagtccgtagcagtg
gagcctgccaaccagaaatag
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