Clostridium scindens: HDCHBGLK_01398
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Entry
HDCHBGLK_01398 CDS
T06591
Symbol
rlmCD_1
Name
(GenBank) 23S rRNA (uracil-C(5))-methyltransferase RlmCD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
csci
Clostridium scindens
Brite
KEGG Orthology (KO) [BR:
csci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csci03009
]
HDCHBGLK_01398 (rlmCD_1)
Enzymes [BR:
csci01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HDCHBGLK_01398 (rlmCD_1)
Ribosome biogenesis [BR:
csci03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HDCHBGLK_01398 (rlmCD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Polbeta
TRAM
Methyltransf_31
NTP_transf_2
Methyltransf_25
Methyltransf_15
TRM5-TYW2_MTfase
MTS
PrmA
Cons_hypoth95
Methyltransf_11
PCMT
Methyltransf_12
Methyltransf_4
MTPAP-like_central
Motif
Other DBs
NCBI-ProteinID:
QBF74002
UniProt:
A0A494WIL1
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All DBs
Position
1374539..1376236
Genome browser
AA seq
565 aa
AA seq
DB search
MQKNELVTVTIEDIGINGEGIGKVDGYTLFIKDAIIGDVVEAKVMKAKKNYGYARLMNIL
TPSPYRVKQPKCPMARKCGGCQIQEMEYDRQLAFKEDKIRGNLMRIGEVPAEVLDQALEP
IVGMDNPFHYRNKAQFPIGTDNEGHIITGFYAGRTHSIIPNTDCALGVEVNEVILKQILT
FMEEYKISAYDETEHKGLVRHVLIRYGFVTKEIMVCLVINGNHLPHGEILAERLAKIEGM
TSITLSINKEKTNVIMGSKIEPLWGKTYITDYIANVKYQISPLSFYQVNPVQTEKLYGLA
LEYAGLTGKETVWDLYCGIGTISLFLAQKAKEVYGVEIVPQAIEDASNNAKINGIENARF
YVGKAEEVLPEYYAQYEKEHGRNAHADVIVVDPPRKGCEESLLQTMVDMEPERIVYVSCD
SATLARDVKFLREKGYELVRGRGVDQFGHTVHVETVALLIPKQDKDSMFSNSGIEKKLWK
EICDLAKQYDVDRVILFGSRARGDYKKVSDIDLAVSGGDVSGFSISVDEETSTLLQYDIV
NLDGSVQEELREAIEKEGKVLYEKV
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaaatgaattggttacggttacgatcgaagatataggaattaacggagaaggc
atcggaaaggtggatggatacacgctgttcattaaagacgccatcatcggcgacgtggtg
gaggccaaagtgatgaaggccaagaagaactacggctatgcaaggctgatgaatattctt
acgccatctccataccgggtaaaacagccgaaatgcccgatggcccgcaaatgcggcggt
tgccagatccaggagatggagtatgaccgccagctggccttcaaagaagacaagatccga
ggaaatcttatgcgtatcggggaggttccagcggaagtgctggatcaggcgctggagccg
atcgtaggcatggacaacccatttcactaccggaacaaggcgcaatttccaatcggaacg
gacaatgaaggacacatcataaccggattctacgccggaaggacccatagtatcattcca
aataccgattgcgcgctgggcgtggaagtaaacgaagtaatcctgaagcagatccttaca
tttatggaagagtataagatcagcgcttatgacgagacagagcataaaggcctggtgcgc
catgtgctgatccggtacggattcgtcacgaaagagatcatggtctgccttgtaatcaac
ggaaatcatctgccccacggggaaatcctggcagagcgcctggcgaagatcgaaggaatg
accagcattacgctgagcatcaacaaagaaaagacgaacgttatcatgggcagcaagatc
gagcccttgtgggggaaaacctacattacagactatatagcaaatgtaaagtatcagatc
tcgccgctgtccttttaccaggtaaatccggtccagacggagaaactgtatggactggcg
cttgagtacgccgggcttaccggcaaagagacggtctgggacctctactgcggcatcgga
accatatccctgttcctggcgcagaaggccaaggaagtctatggcgtggagatcgtgccc
caggccatcgaggacgccagcaataacgccaagatcaatggaatcgagaatgcccggttc
tatgtgggcaaggcagaagaagtgctgccggagtattatgcgcagtacgagaaagagcat
gggaggaatgcccacgcagacgtgatcgtagtggacccgccgaggaaaggatgcgaagaa
tcgctgcttcagaccatggtggatatggagccggagcggatcgtgtatgtgagctgcgac
tcggcgaccttggcccgggatgtgaagttcctgagggagaaggggtatgagctggttaga
gggagaggcgtggatcagtttgggcatacggtgcatgtggagacggttgcgctcttaatc
ccaaaacaagataaggatagtatgttcagtaattcaggaattgaaaaaaagttgtggaaa
gaaatctgcgatttggcaaagcaatatgatgtagatagggtgattctttttggctcccgg
gcaaggggagactataaaaaggtaagcgacattgacttggctgtgtcagggggggatgtt
agtggcttttcgatttctgtagatgaggagacgagtactcttttgcagtatgatatagtg
aatctggatggcagcgtacaggaagagttaagggaagccattgagaaggaagggaaggtg
ctgtatgaaaaagtttga
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