Clostridium scindens: HDCHBGLK_01504
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Entry
HDCHBGLK_01504 CDS
T06591
Symbol
dacB_2
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase DacB
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
csci
Clostridium scindens
Pathway
csci00550
Peptidoglycan biosynthesis
csci01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
csci00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
HDCHBGLK_01504 (dacB_2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
csci01002
]
HDCHBGLK_01504 (dacB_2)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
csci01011
]
HDCHBGLK_01504 (dacB_2)
Enzymes [BR:
csci01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
HDCHBGLK_01504 (dacB_2)
Peptidases and inhibitors [BR:
csci01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
HDCHBGLK_01504 (dacB_2)
Peptidoglycan biosynthesis and degradation proteins [BR:
csci01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
HDCHBGLK_01504 (dacB_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
Beta-lactamase2
Peptidase_S13
Transpeptidase
tRNA-synt_1c_C
Motif
Other DBs
NCBI-ProteinID:
QBF74108
UniProt:
B0NHT9
LinkDB
All DBs
Position
1488282..1489256
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AA seq
324 aa
AA seq
DB search
MEYRIRKRYKKKRRHFIRRVVISIVAVAVLILVGRKFTPNTAIDLENLYSPYSILTDLDS
GNALAEHNAQDRIYPASLTKIMTAILAIENTQDMEEVITLPTDFFSKLYIENASMAGFQP
GEQVRLKDLLYGMLLPSGAECCLAFCERIAGSEEAFVRLMNKKAGELGLENTHFCNSTGL
HDSEHYSTVKDISALLQYALKNETFRAAFTSSQYSTLPSEQHPKGFTFYSTMFECMESTK
FTGGKIIGGKTGYTKEAGLCLASLAEINGKEVILVTANADGTHQTTPFHILDAMNVYRQM
GESSVCYSSKFSPNGYLRKQFIIS
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atggaatatagaattaggaagcgctataaaaagaaaaggcggcattttataaggagggtt
gttattagtattgttgcagtggcggttttgattttagttggaaggaagtttactcctaat
actgcaatagatctggagaacttatatagtccctattcaattttaactgatctggattca
gggaacgctcttgctgaacataatgcacaagatcggatttatccggcatcgcttaccaaa
attatgacagccatactggcaattgaaaatacgcaggacatggaagaagttataacactt
cctacggattttttctcaaaactgtatatagagaatgcttctatggctggctttcagccg
ggagagcaggtccgtttaaaggatttgctttacggcatgcttcttccgtctggtgcggaa
tgctgtctggctttttgcgagaggattgccggctccgaggaagcgtttgtgagactaatg
aacaagaaggcaggggaactggggttggagaatacgcatttttgcaattcaacaggactg
catgattcggaacactactccactgtgaaagatatttctgctcttttgcagtatgcttta
aaaaatgaaacctttagagctgcctttacaagcagtcaatacagtacgcttccatcggag
cagcatccgaagggttttacattttacagtacgatgtttgaatgtatggaaagtacaaaa
tttactggaggaaaaatcataggaggaaaaacgggatatacgaaagaagcaggattatgt
ctggcaagcctggctgaaataaatgggaaagaagtcattttagtaactgctaatgcggat
ggaacgcaccagacaacaccattccatattctggatgctatgaatgtgtatcgtcagatg
ggggaatcgtctgtatgttatagcagtaaattttcacctaatggatatcttaggaaacaa
tttataatttcataa
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