Clostridium scindens: HDCHBGLK_01574
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Entry
HDCHBGLK_01574 CDS
T06591
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
csci
Clostridium scindens
Pathway
csci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HDCHBGLK_01574 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csci03019
]
HDCHBGLK_01574 (recQ)
03400 DNA repair and recombination proteins [BR:
csci03400
]
HDCHBGLK_01574 (recQ)
Enzymes [BR:
csci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HDCHBGLK_01574 (recQ)
Messenger RNA biogenesis [BR:
csci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HDCHBGLK_01574 (recQ)
DNA repair and recombination proteins [BR:
csci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HDCHBGLK_01574 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
Methyltransf_15
Motif
Other DBs
NCBI-ProteinID:
QBF74178
UniProt:
B0NKB3
LinkDB
All DBs
Position
1550038..1551906
Genome browser
AA seq
622 aa
AA seq
DB search
MSKKTAEKLLKQYFGYDGFREGQEQLIEAVLSGRDVLGIMPTGAGKSMCFQIPALMMEGI
TLVISPLISLMKDQVGALNQAGIHAAFLNSSLSVGQYAKALAYAREGRYKIIYVAPERLE
TQGFLDFVMSEGIKISFLAVDEAHCVSQWGQDFRPSYLKILDFLKKLPYRPVIGAYTATA
TTGVRDDIMDILQLQDPSVITTGFDRENLYFAVRKPVDKYKELVSYIRRKEKEMPGSSGI
VYCLTRKNVEDVCYNLRKEGFSVTRYHAGLSDMERKENQDDFIYDRRQIMVATNAFGMGI
DKSDVRFVIHYNMPKNMESYYQEAGRAGRDGEPSDCILYYEPMDVRTNRFFIENNEDNEA
LDEITRRLVKERDEERLRQMTFYCFTTGCLRNYILDYFGEASPGYCGNCLNCITQFEDVD
IAREAASILRCIKANHMNYGVTVIIDIVRGAGNQKILSRGLDRNPEYGSLKEVTVPRLRQ
IIQELLFRGYLELSNDNYPVLKAADAAEQLQQEKVPLLMKLAKEREPERSAGRGKVRRKK
AGAAASLEEKDLELFEALRALRKEIAAEEKVPPYMVFSDKTLALMSAAKPENSSEILTIS
GVGDYKMEKYGARFLEVIARRI
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaaaaaactgcggaaaaacttctgaaacaatattttggctatgatggattccgg
gaagggcaggaacagttgatcgaggctgtcctttccggcagggatgttctgggtattatg
cctaccggtgccggaaaatctatgtgcttccagataccggctctgatgatggaaggaatt
accttggtgatttctccattgatctctttgatgaaggatcaggtaggagccctgaatcag
gcgggcattcatgcggcatttttaaacagttctcttagcgtggggcagtatgcaaaggcc
ttggcgtatgcccgggaggggcggtacaagattatctatgtggcgccggagagactggag
acgcaagggtttctggattttgtgatgtcggaaggcattaagatttctttccttgcggta
gatgaggctcactgcgtctcccaatggggacaggatttcaggcctagttacttaaagatt
ctggattttctgaagaaactgccttaccgtccggtgataggagcctatacggcaacggct
accacgggcgtgcgggatgatattatggacattttgcagttgcaggacccttctgtgatt
acgacgggatttgacagagagaatctctactttgctgtcaggaagccggtagataagtat
aaggaactggtgagctatattcgcaggaaagaaaaagagatgcctggaagcagcggaatc
gtctattgtctgaccaggaagaatgtggaggatgtctgctacaatctgagaaaagaagga
ttttcagttacgagatatcatgcgggcctaagcgatatggaacgcaaggaaaatcaggat
gattttatttacgatcgccgacagatcatggtagcgaccaatgcgttcggaatggggatt
gacaagtcggatgtccgattcgtcatccactataacatgccgaagaatatggagagttat
tatcaggaagccgggcgtgcggggagagatggagagccgtcggactgcattctgtattat
gagcctatggatgtgcgtacgaaccgattctttatcgaaaataatgaggacaatgaagcg
ctggatgagataacgcgcaggctcgtaaaagaacgggatgaagaacggcttcgccagatg
accttctattgctttacgactggctgcctgcgcaattacatactggattattttggagag
gcaagtcctggatattgtggaaactgcttgaattgcataacccagtttgaggacgtggat
atcgccagagaggccgcgtccattctcagatgcataaaggcgaatcatatgaactatgga
gttacggttatcatagatatcgtgcggggagcaggcaatcagaagatactttcaagaggc
cttgacaggaatccggagtatgggagcctgaaggaggttacggtgccgagacttcgccaa
ataatccaggagttattgttccgggggtatctggaattatcaaatgacaattatccggtg
ctgaaagcagcagatgcagcagagcagttgcagcaggaaaaagtgcctctgcttatgaaa
ctggcgaaagaaagagagccggaaagatccgccggaagagggaaagtaagacgcaagaag
gccggggcggctgcatccctggaggaaaaggatttggaacttttcgaggcgctgcgcgca
ttgcgaaaggagattgcggcggaggagaaagtgccgccatacatggtattttccgataaa
acactggcgctcatgagtgccgccaagccagagaattcgagcgagattcttacgatcagc
ggtgtaggcgattataagatggagaagtatggggcgagatttttagaagtaatagcccgg
aggatataa
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