Clostridium scindens: HDCHBGLK_02343
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Entry
HDCHBGLK_02343 CDS
T06591
Symbol
polC_2
Name
(GenBank) DNA polymerase III PolC-type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
csci
Clostridium scindens
Pathway
csci03030
DNA replication
csci03430
Mismatch repair
csci03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HDCHBGLK_02343 (polC_2)
03430 Mismatch repair
HDCHBGLK_02343 (polC_2)
03440 Homologous recombination
HDCHBGLK_02343 (polC_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csci03032
]
HDCHBGLK_02343 (polC_2)
03400 DNA repair and recombination proteins [BR:
csci03400
]
HDCHBGLK_02343 (polC_2)
Enzymes [BR:
csci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HDCHBGLK_02343 (polC_2)
DNA replication proteins [BR:
csci03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HDCHBGLK_02343 (polC_2)
DNA repair and recombination proteins [BR:
csci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HDCHBGLK_02343 (polC_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NI
HHH_6
DNA_pol3_a_NII
Rv2179c-like
tRNA_anti-codon
RNase_H_2
DEDDh_C
DNA_ligase_ZBD
DZR
Motif
Other DBs
NCBI-ProteinID:
QBF74935
UniProt:
B0NE55
LinkDB
All DBs
Position
2288868..2293367
Genome browser
AA seq
1499 aa
AA seq
DB search
MSKPFFEVFPTLKVNEDIRMLFEGVEVTKVATNSDRDFIKVHLYSRHLIQKRRIYEVERL
LKDQLFGRSRIQIEVKERYELSEQYTPENLMNEYFDSLLLELNEKSVVERSMLQGSRYQF
EEGNILCLTLTDTIVAQGKKESLSGYLAEVFQERFQRPIEVRVTYEKPKDSKLRYNDVKL
KQEVDAILEHAEAVQEEKELKKKAQDEKEGASSKPTKSQNGNGAGKKEKKAFFGNGRRDG
FSYKKNSNDPNLIFGRDFDDETIELKQLVGEMGEITIRGKVISFDTREIRNEKTIIMYAV
TDFTDTIMVKMFVRNEQLPDILADVKKGAFLKIKGVTTIDKFDGELTIGSITGIRKINDF
TESRKDTAPEKRVELHCHTKMSDMDGVSEVKDLVKRAHDWGHKAIAITDHGVVQAFPDAN
HYIETLDKDDPFKVIYGVEGYLVDDLTDVALGEKGQTLDDVYVVFDLETTGFSPIKDKII
EIGAVKVENGKITERFSTFVNPKIPIPFRITQLTSITDQMVMDAPDIDTVLPQFLEFIGD
AVLVAHNASFDVGFIEQNCRYQDIVPNFTSVDTVAMARILLPTLSKFKLNVVANALHISL
ENHHRAVDDAGATAEIFVKFVEMLKERNINDLARLNQFGSNNADAIKKLPTYHVIILALN
EVGRVNLYTLISKSHLDYYARRPRIPKSELSKYREGLMVGSACEAGELYQAILNEKSEER
IARIVNFYDYLEIQPLGNNRFMIASDRIENVQSEEDLKKINKKIVDLGDRFNKPVVGTCD
VHFMDPEDEVYRRIIMAGKGFGDADEQAPLYLRTTDEMLEEFEYLGSTKAKEIVIDNPCK
IADMAEKITPVRPDKCPPVIPDSDKMLREICYNKAHSMYGEELPPIVTERLERELNSIIS
NGFAVMYIIAQKLVWKSNEDGYLVGSRGSVGSSFVATMAGITEVNPLSPHYYCKHCHYSD
FESEEVRAFAGGCGWDMPDKNCPVCGEKLVKDGFDIPFETFLGFKGNKEPDIDLNFSGDY
QSNAHKYTEVIFGAGQTYRAGTVGTLADKTAFGYVKNYYEERGQRKRNCEIDRIVQGCTG
IRRSTGQHPGGIIVLPLGEEINSFTPVQHPANDMTTDIVTTHFDYHSIDHNLLKLDILGH
DDPTMIKTLEEYISSPALENEYNESDNRFVATKIPLDDKGVMSLFHDTSALGIKPDDIGG
CPVGCLGIPEFGTDFVVQMVVDTQPKTLSDLIRISGLSHGTDVWLNNAQELIKSGKATIS
TAICTRDDIMTYLINKGMDSELSFTIMEKVRKGKGLTDDFEKSMKEAGVPDWYIWSCKQI
KYMFPKAHAAAYVMMAYRIAYCKINYPLAYYGAYFGIRADAFSYEIMCRGKDVLQHYIDE
YNSRSATLSKKEQDTMKDMKIVQEMYARGYEFMPMDIYKAQATKFLIIDGKLMPPLSSID
GMGEKAAEAVAEASKDGPYLSRDDFRQRTKASKSVIDYMVELGILSDLPESNQLSLFDF
NT seq
4500 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagccgttctttgaagtatttccaacattaaaagtaaatgaagatatccgcatg
ctgtttgaaggcgtggaagtaacgaaagttgcgaccaattccgaccgggattttatcaag
gtgcatctttacagccgccatctgatccagaaaaggcgtatctacgaagtagagaggctg
ctgaaggatcagctgttcggacgcagccgcatccagatcgaagtgaaggaaaggtatgaa
ctgtcagagcagtatacgcctgagaacctgatgaatgaatattttgacagccttctgctg
gaactgaatgaaaaaagcgtggtggagcgcagcatgctccaaggctcaaggtatcagttc
gaagaggggaatatcctttgcctgacgcttactgacaccatagtagcccaagggaagaaa
gaatccctgtccggttatctggcagaagtatttcaggaaagattccagaggcccattgaa
gtacgggtcacatatgagaagcccaaggatagcaagttaagatataatgatgtcaaactc
aagcaggaagtagacgccatactggaacatgcagaagcagttcaggaggagaaggaactt
aagaagaaggcccaggatgaaaaggaaggcgcttcttcaaagcccacgaagagccagaat
ggaaatggcgcgggcaaaaaggaaaagaaggcgttcttcgggaatggcagaagggatgga
ttctcttataagaagaattccaatgatccgaacctgatctttggacgagattttgatgat
gagacgatagaactaaagcagttagttggcgagatgggtgagattaccatccgcggcaag
gtcatcagttttgacacccgggagatccgtaacgagaagacaatcatcatgtatgcggtg
acagactttacagatacgatcatggtcaagatgtttgtgcgaaacgagcagctgccggat
attctggcagacgtaaagaaaggcgcgttccttaagatcaagggagtcaccaccattgat
aaatttgacggggaacttaccattgggtcgatcacaggaatccgaaagattaatgatttt
acggagtccaggaaggatacggctccggaaaagagggtagagcttcattgccatacgaag
atgagcgatatggatggcgtatcggaagtaaaggatcttgtaaaacgtgcccatgactgg
ggacacaaggcgattgccattactgaccacggagtagtccaggcattcccggacgccaac
cattacatcgagaccctggataaggacgatccttttaaggtgatctacggagtagaaggc
tatctggtagatgaccttacggatgtggccttgggtgaaaaggggcagaccctggacgat
gtctatgtagtattcgatctggagacgacgggctttagtccgattaaggataagattatt
gagataggcgcggtgaaggtagagaacgggaagataacagagcggttcagtacatttgtg
aatcccaagattccaatcccgtttcgtattacccagctgaccagcattacggatcagatg
gtcatggatgcgccggatattgatacggtgctcccacaattcttggaattcattggggac
gcagttctggtagcgcataatgcgtctttcgacgtgggatttatcgagcagaattgcaga
taccaggatattgtgccgaattttacttctgtggatacggtggccatggccagaatcctt
cttcctacattgtcgaagtttaagctcaatgtagtagccaacgcactccatatatccctg
gagaaccatcaccgggcagtggacgacgcaggcgccaccgcggagatcttcgtgaagttc
gtggagatgctgaaggaacgcaatatcaatgatctggcaaggttaaaccagtttggcagc
aataatgcggatgcgatcaagaagcttcccacataccatgtgatcatactggctctgaat
gaagtaggccgggtgaatctatataccctgatatccaagtctcatctggattattatgcc
aggcggcccagaatccccaagagcgagctgtccaaatacagggaaggactgatggtaggc
agcgcctgcgaggcgggagaactgtatcaggctatcctgaacgaaaagtcggaagaacgg
atcgcgaggatcgttaatttctatgattatctggagatacagccattgggaaataaccga
tttatgattgccagcgaccgtattgagaatgtacagagtgaagaagatcttaagaagatc
aacaagaagatcgtggatctgggagaccgattcaacaagccggtggtaggtacctgcgat
gtgcattttatggatccggaagatgaagtctaccggcgcatcatcatggcaggaaaaggc
ttcggggatgcggacgagcaggcgccactctatctgcgcaccaccgacgagatgttagaa
gagtttgaatatctgggttcgacaaaagcaaaggagatcgtgatagacaatccctgtaag
attgcggatatggcagaaaagattacgccggtaaggccggacaagtgcccgcccgtaatt
cccgattccgataagatgctgagggagatctgctacaataaggcccactccatgtacggg
gaagagctgccgccgattgttacggagcgtctggagagggaactgaattccatcatctcc
aacggcttcgcagtaatgtacattatagcgcagaaactggtgtggaagtccaatgaggat
ggctatctggttggatcccgtggctccgtaggatcttccttcgtggcgactatggcggga
attaccgaggtaaatcccttgagccctcattactactgcaagcattgccattacagcgac
ttcgagtctgaagaagtgcgggcatttgccggcggctgcggatgggatatgccggataag
aactgccccgtctgcggggagaagctggttaaggacggattcgatattcctttcgagacg
ttccttgggttcaaggggaacaaggagccggatattgaccttaacttctctggcgactat
caaagtaacgcccacaagtatacggaggtcatcttcggcgcaggccagacataccgtgca
ggcacggtaggaacattggcagataagacggcgttcggctatgtgaagaattactatgag
gagcgggggcagcggaagagaaactgcgagattgaccggattgtccaggggtgtactgga
atccgaaggagtaccggacagcatccgggaggcatcattgtgcttcctctgggggaagag
attaattcatttactccggtacagcatccggccaatgatatgacgacggacatcgtcacc
acccactttgactaccattctattgatcacaatctgctgaaacttgacatcctgggccat
gatgatccgaccatgatcaagacgctggaagagtacatcagttctccagcgctggaaaat
gaatacaatgagtcggacaaccgattcgtggcaaccaagattcctctggacgacaagggg
gtaatgtccttgtttcatgatacgtcggccctgggaatcaagccggatgacattggcggc
tgcccggtgggatgccttggcatcccggaattcggaacggactttgtcgtacagatggtg
gttgatacccagccaaagaccttgtctgacttgatccgtatctccggtctgtcccatggc
acggacgtgtggcttaacaacgcccaggaattgatcaagagcggaaaggctaccatatca
acggcaatctgtacccgcgatgatatcatgacctacctgatcaataaagggatggacagt
gaattatcctttaccattatggaaaaagtaagaaaaggaaaagggcttacagacgatttc
gagaaatccatgaaggaggccggagtccctgactggtatatctggtcttgcaagcagatc
aagtatatgttcccgaaggcccatgcggcggcctacgttatgatggcgtaccggatcgct
tactgcaagatcaattatccgctggcctattatggggcgtattttggaatccgcgcggac
gcgttctcctatgagatcatgtgccgaggcaaggatgtgctgcagcattatatcgatgaa
tataacagccggtctgcgactctgagcaagaaggaacaggacacgatgaaagatatgaag
attgtccaggagatgtatgccagagggtatgaatttatgcccatggacatctacaaggct
caggcgaccaagttcctgattattgacgggaaactgatgccgcccctttcaagcattgac
ggaatgggagaaaaggcggcagaagcggtggcggaagcgtccaaggacgggccatatctg
tcaagggacgacttccggcagcgtaccaaagccagcaagtcggtcattgactatatggtg
gaactgggcatactgtccgacttgccggaatccaatcagctgtcgctgtttgacttctag
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