Clostridium scindens: HDCHBGLK_02904
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Entry
HDCHBGLK_02904 CDS
T06591
Symbol
polA_3
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
csci
Clostridium scindens
Pathway
csci03030
DNA replication
csci03410
Base excision repair
csci03420
Nucleotide excision repair
csci03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HDCHBGLK_02904 (polA_3)
03410 Base excision repair
HDCHBGLK_02904 (polA_3)
03420 Nucleotide excision repair
HDCHBGLK_02904 (polA_3)
03440 Homologous recombination
HDCHBGLK_02904 (polA_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csci03032
]
HDCHBGLK_02904 (polA_3)
03400 DNA repair and recombination proteins [BR:
csci03400
]
HDCHBGLK_02904 (polA_3)
Enzymes [BR:
csci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HDCHBGLK_02904 (polA_3)
DNA replication proteins [BR:
csci03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HDCHBGLK_02904 (polA_3)
DNA repair and recombination proteins [BR:
csci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HDCHBGLK_02904 (polA_3)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HDCHBGLK_02904 (polA_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
UvsW-1
DUF4916
XPG_I
Motif
Other DBs
NCBI-ProteinID:
QBF75493
UniProt:
B0NB25
LinkDB
All DBs
Position
2850075..2852690
Genome browser
AA seq
871 aa
AA seq
DB search
MNSKIVLIDGHSILNRAFYGLPDLTNADGLHTNAIYGFLTIMFKILEEEKPDYLTVAFDV
HAPTFRHEMYEEYKGTRKPMADELRQQVPVIKEVLKAMGIRIIEQAGLEADDLIGTLSKR
CAQKGMEVSVISGDRDLLQLATEQVKIRIPKTKQGRTEVEDYYAQDVKERYQVTPTEFID
LKALMGDASDNIPGVPSIGEKTATKIITEYHSIEEAYAHVDEVKPPRASKALKEHWDMAV
MSKRLATINVDADFPYELEEAKLGNIYTEEAYAYFQKLQFKNLLQRFDVTAPSNQVEDAF
QEVKDRKEAEAIFAAAKGADEIGACIFKDTQNVLPLFAGQAGIDGIGLCFSKKDVYCIRA
GQGIELSWLLEQLEGVAKDAGRFAMFDIKEALEHIRIARQDNCFDVTVAAYLLNPLKSNY
TYEDVAREQLNLIIEDKLDAWMKACYEAYTAYAASGILWKRLKECLMDRLFMDVEMPLVF
TLYDMEVNGVRVEAEALKYYGDQLGAKIVELEKDIYEEAGENFNINSPKQLGVVLFENMK
IPGGKKTKTGYSTAADVLEKLAPDYPIIAKILEYRQYTKLKSTYADGLANYIREDGRIHS
KFNQTITATGRLSSTEPNLQNIPIRVELGRLIRKVFIPEDGFVFVDADYSQIELRVLAHC
SGDSHLIEAYKEKKDIHRITASQVFHIPFDEVTDQQRRNAKAVNFGIVYGISSFGLSQDL
SITRKEASKYIEDYFTAYPGIKIFLDDTVKHAKEMGYVVTLFGRRRPVPELSSSNYMQRS
FGERVAMNAPIQGTAADIIKIAMTGVGRRLKEQKMKSRLVLQVHDELLVEAYKPELDQVK
KILKEEMEQAASLDVPLEIDMHTGENWYEAK
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtaagattgttttgatagatggacatagcatcctgaaccgcgcgttctatgga
ctcccggatctgaccaatgcagacgggcttcatacgaatgccatttacggctttctgacg
attatgttcaagatattagaagaagaaaagccggactatttgacggttgcctttgatgta
catgcgcctacgttccgccatgagatgtatgaggaatacaaagggacgagaaagcctatg
gccgatgaattacgccagcaggtgccggtgatcaaggaagtgttaaaggcgatgggcatc
cggattatcgagcaggcggggctggaggcggatgacctgatcggaaccttgtccaagcga
tgcgcgcagaagggaatggaagtgtctgtcatctccggagaccgggatctgctgcagctg
gcgacagagcaggtgaaaatccgcattcccaagacgaagcagggccggacggaagtggag
gactattatgcccaggatgtcaaggaacgctatcaggtaactcccacagagtttatcgac
cttaaggcgcttatgggcgatgcgtccgacaatataccaggagtgccaagcattggagag
aagacggcgacaaagattatcacggagtatcattcgatcgaagaagcttatgcccatgtg
gatgaggtaaagccgcccagggcgtcgaaggcattaaaggaacattgggatatggcggtc
atgagcaagagactggctacgatcaatgtggacgcggattttccatatgaactggaagag
gcaaaacttgggaatatctacacggaagaggcctatgcatacttccagaaactgcagttt
aagaatctgctgcagcgttttgatgtgaccgcgccatccaaccaggtagaggatgcgttt
caggaagttaaggatagaaaagaggcagaagccatatttgcggcagcaaaaggagccgat
gagataggcgcgtgcatattcaaggatacccagaatgtgcttccgcttttcgcagggcag
gccgggattgacggcattggactttgtttttctaaaaaggatgtctactgcattcgcgcg
ggccaggggatcgaactatcctggcttctggaacagctggagggtgtagcaaaagatgca
gggcgctttgccatgtttgacatcaaggaggctctggagcatatccgcattgcccgccag
gataactgttttgatgtgacggtggcggcgtaccttctgaatcccctgaaaagtaattat
acctatgaggatgttgcaagggaacaactgaacctgattatagaagataaactggatgcc
tggatgaaggcatgctatgaagcctatacggcgtatgccgcatccgggattctgtggaag
cggctgaaggaatgtctgatggacagactgtttatggatgtcgagatgccgctggtattt
accctttatgacatggaagtaaacggcgtaagggtggaagctgaggcgcttaagtattac
ggcgaccaactgggcgccaagatcgtggaactggaaaaggatatttatgaggaagcggga
gaaaacttcaacatcaattctccgaaacagttgggcgtggttctttttgaaaacatgaag
attccggggggcaagaagacgaagacaggctactctacggcggcggacgtactggagaaa
ctagcgccggattacccgatcatcgcaaagatcctggagtacaggcagtatacaaagtta
aagtccacctatgctgacgggcttgccaattacatccgggaagacggacggatccacagc
aagttcaaccagacgatcacggccaccggaagactgagcagtacggagccgaacttgcag
aatatcccgatccgtgtggaactgggaagactgattcgcaaggtattcatcccggaagac
ggattcgtcttcgtagacgcggattattcccagattgagctgcgcgtgctggcccattgt
tccggggacagccatctgatcgaagcctacaaggaaaagaaggacatccacaggattacg
gcatcccaagtgttccacattccgtttgacgaggttacggaccagcagcggcgcaatgcc
aaggcggtcaattttggaatcgtatatggcatcagttcgttcgggttgagccaggatttg
agcatcaccaggaaagaggcatccaagtatattgaagactatttcaccgcttatccgggc
atcaagatattcctggatgatacggtgaagcatgcaaaagagatggggtatgtggtaacc
ctgttcgggcgcaggcgcccggttccggaactgtcttccagcaattacatgcagcgctct
ttcggcgagagggttgccatgaatgcgcccatccagggaacggcggcggacatcatcaag
attgcgatgacaggagtgggcaggcggcttaaggagcagaagatgaagtcaaggctggtg
ctgcaagttcatgatgaacttctggtggaggcgtacaagccggaacttgaccaggtaaag
aagatactgaaagaagagatggagcaggcagcatctttggatgtgccgctggagatagac
atgcatacaggagaaaactggtacgaagcaaagtag
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