Clostridium scindens: HDCHBGLK_03123
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Entry
HDCHBGLK_03123 CDS
T06591
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
csci
Clostridium scindens
Pathway
csci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HDCHBGLK_03123 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csci03019
]
HDCHBGLK_03123 (pnp)
03016 Transfer RNA biogenesis [BR:
csci03016
]
HDCHBGLK_03123 (pnp)
Enzymes [BR:
csci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HDCHBGLK_03123 (pnp)
Messenger RNA biogenesis [BR:
csci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HDCHBGLK_03123 (pnp)
Transfer RNA biogenesis [BR:
csci03016
]
Prokaryotic type
tRNA degradation factors
HDCHBGLK_03123 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_KhpA-B
KH_PNO1_2nd
KH_NusA_1st
Motif
Other DBs
NCBI-ProteinID:
QBF75712
UniProt:
B0NAE4
LinkDB
All DBs
Position
complement(3050312..3052399)
Genome browser
AA seq
695 aa
AA seq
DB search
MYKKFEMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPREGIDFFPLSVE
YNERLYSVGKIPGGFNKREGKASENAILTCRVIDRPMRPLFPKDYRNDVTLENLVLSVDQ
DCSPELTAMLGAAIATTISDIPFDGPISTTQVGIVDDEFVFNPTAAQKEASDLALTVAST
KEKVIMIEAGANEVPEQKMIDAIFAAHELNQKVIAFIETIVAECGKPKHAYESCAVPEEL
FAAITEIVPPSEMEEAVFTDDKQTREENIRVITAKLEEAFADKEEWLNVLGEAVYQYQKK
TVRKMILKDQKRPDGRAIDQIRPLAAEIDLIPRVHGSAMFTRGQTQICTITTLAPLAEAQ
RLDGLDEAETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPNEAEFP
YAIRTVSETFESNGSTSQASICASSMSLMAAGVPIKAAVAGISAGLVTGDSDDDYLVLTD
IQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIAATKKARTYILDEVMSK
TIAEPRPEVGQYAPKIIQMQIDPQKIGDVVGQRGKTINAIIDQTGVKIDITDDGAVSICG
TDANSMEEAKRLVQIIVTDFEAGQVLEGKVVSIKEFGAFLEFAPGKEGMVHISKISKERI
NHVEDVLTLGDVVKVVCLGKDKMGRLSFSMKDVAK
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgtataagaaatttgagatggaacttgcaggcaggactctgcgcgtagatgtggacagg
gttgccaagcaggcaaatggagcggtactgatgcattacggtgacaccaccgtgttatgc
acggcaacggcttccgagaagccgagagagggaattgattttttcccgctaagcgttgaa
tacaatgagagattatactctgtaggaaagattcctggaggattcaataagagagaagga
aaggcatctgagaatgcaatccttacctgccgtgtcattgatcgtccgatgaggccttta
ttcccgaaggactaccgcaatgatgtgacgttagagaacctggtattatccgtagaccag
gactgctctccggaacttacggcaatgctcggagcggcaattgccactaccatatccgat
attccgtttgacggaccgatctctacgacacaggtaggcattgtggatgatgagttcgta
tttaatccgactgcagcgcagaaggaagcatccgatcttgcgcttacggttgcctctaca
aaagagaaggtgatcatgatcgaggctggcgccaatgaagtgccggagcagaagatgatc
gacgcgatctttgctgcccacgaactgaaccagaaggtcatcgcgttcatcgagacgatc
gtggcagagtgtggaaagccgaagcatgcatatgaaagctgcgcggttccggaagaactg
tttgccgcaatcacggagattgttcctccgtcagagatggaagaagccgtatttacggat
gacaagcagaccagagaagaaaatatccgcgtaatcacggcaaagctggaagaggcattt
gcagacaaagaagaatggctgaatgtgcttggagaggctgtataccagtaccagaagaag
acggtacgcaagatgatcttaaaggatcagaagcgtccggatggaagagccatcgaccag
attaggccgcttgctgcagagattgacctgattccaagggttcacggctcagccatgttt
acaagaggacagactcagatctgcaccatcaccaccctggcaccgcttgcagaagcccag
aggctggatggcttggatgaggcagagacttctaagagatatatgcaccactataacttc
ccatcttactccgtaggagagacaaggccatcaagaggcccgggacgccgggagattgga
catggagcattggcagagcgcgcactgataccggtacttccaaatgaggcagagttccca
tatgcgatccgtaccgtatctgagacatttgaatccaacggctctacctcccaggccagc
atctgcgcgtcctcaatgtccctgatggcagccggcgtgccgatcaaggctgcagtggca
gggatctcagcaggactggtgacgggtgattcagacgatgactatctggtactgacagac
atccagggcctggaagacttctttggagacatggactttaaggtggccggaacccataag
ggaattacagccatccagatggatatcaagattcatggcctgacaaggccgatcattgag
gaggcgattgcggcaacgaagaaagcaagaacctatatcctggatgaagtaatgtctaag
accatcgcagagccaagaccggaagtaggccagtatgctccgaagatcatccagatgcag
atcgatccacagaagatcggcgatgtagtgggacagcgcggaaagactatcaatgcaatc
atcgaccagaccggagttaaaatcgacattaccgatgacggagccgtatctatctgcgga
accgatgctaacagcatggaagaggcaaagagactggttcagatcatcgtgaccgatttc
gaggcaggccaggtactggaaggaaaggtcgtaagcatcaaggaattcggcgcatttctt
gagttcgcgcctggaaaagaaggaatggtacacatttccaagatttctaaggaaagaatc
aaccatgtagaagacgtgctgacattgggcgacgtggttaaggtcgtatgccttggcaag
gacaaaatgggcagactgtcattcagcatgaaagacgtggcaaaataa
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