Clostridium scindens: HDCHBGLK_03426
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Entry
HDCHBGLK_03426 CDS
T06591
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csci
Clostridium scindens
Pathway
csci03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HDCHBGLK_03426 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csci03400
]
HDCHBGLK_03426 (mfd)
Enzymes [BR:
csci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HDCHBGLK_03426 (mfd)
DNA repair and recombination proteins [BR:
csci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HDCHBGLK_03426 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
QBF76010
UniProt:
B0NCF3
LinkDB
All DBs
Position
complement(3354936..3358280)
Genome browser
AA seq
1114 aa
AA seq
DB search
MQALIRPLNELAEFEEISRDIRKGAGMIRVCGCVNSQKTHMMYALSDGCNYRVIACSSES
KAKQVYEEYRFLDPNTHLYPAKDLLFYQADLRSKELVSQRMEVIQAVAAGEKATVITSFD
AFMDTLLPKDVIVEKTVRIANDSTFHLEEMQSRLVALGYDREVQIEAPGQFAVRGGILDV
YPLTEELPIRIELWGDEVDSIRTFDVETQRSIENLEEVSICPAVEFPQEGEKGVSFLDYF
PMEETILFLDEPVRLIEKGQGVEEEFLEAQKKRVESGYEVTDAEVQLYHTEEILRKMNAY
SSVGFFALDMKCRGLETKASFSLQTKSVNPYNSSFDMLTQDLKRLKRNGYRVVLLSGSRT
RAKRLAEDLRDYNLSSYYSDELDREVAPGEIMTAYGHVAYGYEYPMLKFTVISETDIFGK
TKKKKKRKTYEGRKIQSFAELKVGDYVVHENHGLGIYQGIEKIEVDKISKDYMKISYAQG
GNLYIPATQLDLIQKYASADAKKPKLNRLGTQEWTKTKTRVRGAVREIAKDLVRLYAARQ
EQEGYVYGEDTVWQREFEEMFPFEETEDQLLAIEAVKQDMMSHKIMDRLICGDVGYGKTE
IAIRAAFKAVQEDKQVVYLVPTTILAQQHYNTFAQRMKDFPVRVDLMCRFRTPAQQKKTI
EDTKKGLVDIVIGTHRVLSDDLKFKDLGLLIIDEEQRFGVQHKEKIKKLKENVDVLTLTA
TPIPRTLHMSLIGIRDMSVLEEAPNDRMPIQTYVMEYNDEMVREAIERESGRQGQVYYVY
NRVEDIAEITGHIQKLVPDVTVEYAHGQMKEHQLERIMYDFINGEIDVLVSTTIIETGLD
ISNVNTMIIHDADHLGLSQLYQLRGRVGRSNRMAYAFLLYRRDKLLREVAEKRLAAIREF
TDLGSGFKIAMRDLEIRGAGNLLGAEQHGHMEAVGYDLYCKMLNEAVKHLKGEMEEETFN
TTMDLNVDAYIPDSYIPNEYQKLDIYKRVAAIENEEEMEDMLEELIDRFGDIPKKVETLL
AVASLKAIAHSAYVTAVEQKGERFTFSMYEKAKVQPQKIPGLLEQFKGDLAFKADAENPC
FLYEKKSRNKKEKNTDVLAVVKNVLIGIKGLIDQ
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgcaagccttaatcaggccactgaatgaattagcagaatttgaagagattagcagggac
ataagaaaaggcgcggggatgatacgagtctgcggatgcgtgaattcccagaaaacccat
atgatgtatgcgttgagcgatggctgtaattacagagtcatcgcttgttcaagtgaatcc
aaggcaaaacaagtctatgaagagtatcgattcctggatccgaatacccatctgtatccg
gccaaagacctgctcttttaccaggcagacttaaggagcaaggaactggtaagtcagagg
atggaagtgatccaggcggtggcggcaggcgaaaaggctacggtgattaccagtttcgat
gcgttcatggacacccttctgcccaaggatgtaattgttgaaaagacggtgcggattgca
aatgacagtacctttcatctggaagagatgcagtccaggctggtggcgcttggctatgac
agggaagtgcagattgaggctcccggccagtttgcggtaaggggcggcatactggatgtc
tatccccttacagaagaacttccgatccggatagaactgtggggagatgaagtggattcg
atccgtacttttgatgtggagacccagagatctatcgagaatctggaagaggtgtcgatc
tgtccggcggtggaatttccgcaggaaggagagaagggggtttcctttttggattatttt
ccaatggaagagacgatcctgttcttagatgagccggtccgcctgatcgaaaaagggcag
ggggtggaagaagagtttctggaagcccagaaaaagagggtggaaagcggatacgaagtc
acggacgcggaagtgcagctgtatcatacggaagagatcttaagaaaaatgaacgcttat
agcagcgtcggcttttttgccctggatatgaaatgcaggggactggagacaaaggcctcc
ttcagccttcagacgaaaagcgtcaatccttataacagcagttttgacatgctgacgcag
gatttgaagcgtctgaaaaggaatggatacagggtggttcttctatccggatccaggacc
agggcgaagcgtctggcagaggatctaagggattataatctgagcagttattatagcgat
gagttggaccgggaagtggcgccgggcgagattatgacggcttatgggcatgtggcatat
ggctatgagtatccgatgctgaagtttacggtgatctcggagacggatatcttcggaaag
acgaagaaaaagaagaagcgtaagacctatgaagggcgaaagatacagagttttgcggaa
ctgaaggttggagattatgtggttcatgagaaccatggcctggggatataccagggcatc
gagaagatcgaggtagataagatatccaaggactatatgaagatatcctatgcccaggga
ggcaatctatatatcccggctacccagctggacctgattcagaaatatgcaagcgcggat
gccaagaaacccaaattaaaccgtctgggcacgcaggaatggacgaagaccaagaccaga
gtccgaggggcagtaagggagattgccaaagatctggtcaggctgtacgccgcaagacag
gagcaggaaggctacgtatatggagaggatacagtctggcagagggaatttgaggaaatg
ttcccctttgaagagacagaagaccagctgcttgccatcgaggccgtcaagcaggatatg
atgagtcataagattatggaccgcctaatctgcggggatgtaggatatggaaagacggag
attgccatccgggcggccttcaaggcagtgcaggaggataagcaggtcgtctatctggta
cccaccacgatcctggcccagcagcattacaatacatttgcccagaggatgaaggacttt
ccggtccgggtggatctgatgtgcagattccggactccggctcagcagaagaagaccatc
gaggataccaagaaaggcttggtggatattgtgattggcacccacagagtcttaagcgac
gatctgaaattcaaggacctgggacttctgatcatcgatgaggagcagcgtttcggcgtc
cagcataaggaaaagattaagaaactgaaggaaaatgtggatgtattaactctgacggca
acgccgattccgcggacgcttcatatgagcctgatcggaatccgggatatgagcgtgctg
gaagaggctcccaacgataggatgccgatccagacctacgtcatggagtataatgacgag
atggtaagagaagcgatcgaaagagaatccggaaggcaggggcaggtatattatgtctat
aaccgagtggaggatatagcagagataacaggccatatccagaaactggttccggatgtc
acggtggaatacgcccacggccagatgaaggagcaccagctggagaggataatgtacgac
tttatcaacggagagatagacgtgctggtatccacaacgattattgagaccgggctggac
atctccaatgtaaatacgatgattatccatgatgccgatcatctgggcctgtcccagctc
tatcagctgcggggaagagtagggcgttctaaccgaatggcttatgcctttctactttat
cggagggataaactgctccgggaagttgcggaaaaaaggctggctgcgatccgagagttc
acagacttgggatcaggattcaagattgccatgcgtgatctggaaatcaggggggccggc
aatcttctaggcgctgagcagcatggccatatggaagccgtgggatacgacctatactgc
aaaatgcttaatgaggcggtgaagcatttaaaaggcgagatggaagaagagactttcaac
actacgatggatctgaatgtggatgcatatatcccggattcctatattcccaacgagtat
cagaaactggatatctataagcgggtggcggccattgaaaatgaagaagagatggaagac
atgctggaagagctgattgaccgtttcggagatatccccaaaaaggtggagactctcctg
gctgtcgcaagcctgaaagcgattgctcacagcgcctacgtgacggcagtagagcagaag
ggagaaagattcaccttctccatgtatgaaaaggccaaagtccagccccagaagattccc
ggactcctggagcagtttaaaggggatctggcctttaaggcagatgcagagaatccttgc
ttcttatatgagaagaagagtcgcaataaaaaagagaaaaatacggatgtgctggcggtt
gtgaaaaatgtgctaattggaattaaaggattgattgaccagtaa
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