Clostridium scindens: HDCHBGLK_03442
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Entry
HDCHBGLK_03442 CDS
T06591
Symbol
spoVD_1
Name
(GenBank) Stage V sporulation protein D
KO
K08384
stage V sporulation protein D (sporulation-specific penicillin-binding protein)
Organism
csci
Clostridium scindens
Pathway
csci00550
Peptidoglycan biosynthesis
csci01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
csci00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
HDCHBGLK_03442 (spoVD_1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
csci01011
]
HDCHBGLK_03442 (spoVD_1)
Peptidoglycan biosynthesis and degradation proteins [BR:
csci01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
HDCHBGLK_03442 (spoVD_1)
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GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
PBP_dimer_2
CBL
PRS7_OB
HTH_AsnC-type
HTH_24
Motif
Other DBs
NCBI-ProteinID:
QBF76026
UniProt:
B0NCD5
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Position
complement(3372826..3374550)
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AA seq
574 aa
AA seq
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MKNKTYNKKKIFVVFICAAAIILALVGRLVYLMVFDAQYYQKKAEALHEREREIKAARGE
IVDAGGTVLATNKTVCTISVIHSQVKDPETVIRELSAALEMDETTVRARVEKVSSMERIK
ANVDKATGDKIRNLELEGVKVDEDFKRYYPYNELASKVLGFTGGDNQGIIGLEVKYEEYL
KGINGTILTTTDARGVELDGVAEDRVEPVAGNTLQVSLDYNIQMYAQQMAEKVMEEKQAD
KVAILLMNPQNGEILAMVNVPEFNLNEPFTLNSGESGDSMTDEKKQEALNQMWRNGCIND
TYEPGSTFKIITASACLEEGVVHLDDTFSCPGYRVVEDRKIRCHKVGGHGSETFVQGIQN
SCNPVFIDIGLRLGVDRFYDYFGQFGLMDMTGVDLPGEAGTIMHKKENIGLVELATMSFG
QSFQITPMQMATTVSSLINGGRRVTPHFGVRVLDSKGKEIEEFRYKEKKNIVSEETSATM
RMLLESVVSEGSGKNAKVEGFRIGGKTATSQTLPRSANKYISSFIGFAPADNPQVLGMCV
IYNPQGVYYGGTIAAPVIGNIFENILPYLGIEKQ
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgaagaataaaacgtataacaagaaaaagatattcgtagtattcatctgcgcggctgca
atcattctggcgctggtggggaggctggtctatctgatggtatttgatgcccagtactac
cagaagaaggcggaagcccttcatgagagggagcgggagatcaaggcggccagaggagag
attgtggatgcgggaggcaccgtcctggctactaataagacggtctgtaccatctctgtg
atccatagccaggtaaaagatccggaaaccgtaatccgggaactttccgctgcccttgag
atggacgagacgacggtgcgagccagggtggagaaggtgtcttctatggagcggatcaag
gcgaatgtggataaggctaccggggataagattcgaaacctggaattggaaggcgtgaag
gtggatgaagatttcaaacgatactatccttataacgaactggcctccaaggtccttgga
tttaccggcggagataaccagggaattatcggactcgaggtaaagtatgaggaatattta
aagggaattaatggaacgatattgacgacaacggatgccagaggcgtggaacttgacggg
gtggcggaagacagggtggagccggtagcgggaaatacgcttcaggtaagcctggattat
aatatccagatgtatgcccagcagatggcggaaaaggtaatggaagaaaagcaggcagac
aaggtggctatcctgcttatgaatccgcagaacggggagatacttgccatggtaaatgtg
cctgagttcaacctgaacgagcccttcaccttgaattcgggagaaagcggcgattctatg
acggatgaaaagaagcaggaagccttgaaccagatgtggaggaatggatgtatcaatgat
acctatgagccaggctccacctttaagatcatcactgcatccgcctgcctggaggaaggc
gtggttcatctggatgatacattcagctgtcccggataccgggtggtggaggatcgcaag
atccgctgccataaagtaggagggcatggatcagagacttttgtccagggcattcagaat
tcttgcaatcctgtattcattgatatcgggctgaggctgggagtggaccggttctacgac
tatttcgggcagttcgggctgatggatatgacaggcgtagaccttccgggcgaggcagga
acgatcatgcataagaaggagaatatagggcttgtggaactggcgacgatgagttttggc
cagtctttccagattaccccgatgcagatggcaactacggtcagttccttaatcaacggg
ggaagaagagtgacgccccacttcggggtaagggtcctggattcgaaaggaaaagaaata
gaagagttccgctacaaagaaaaaaagaatatcgtatcagaagagacttccgctaccatg
cgcatgcttctggagagcgtggtatccgaaggatccgggaaaaacgccaaggtggaaggt
ttccggataggcgggaagacggctacctcccagacgctgccacgaagcgccaataaatat
atctcttcgttcattgggtttgcacctgcggataacccgcaggtgctggggatgtgcgtc
atatataatccgcagggagtctattatggcgggacgatcgcagcgcctgtcatagggaac
atatttgagaatatattgccctatcttggcattgaaaaacaatag
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