Clostridium scindens: HDCHBGLK_03443
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Entry
HDCHBGLK_03443 CDS
T06591
Symbol
spoVD_2
Name
(GenBank) Stage V sporulation protein D
KO
K08384
stage V sporulation protein D (sporulation-specific penicillin-binding protein)
Organism
csci
Clostridium scindens
Pathway
csci00550
Peptidoglycan biosynthesis
csci01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
csci00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
HDCHBGLK_03443 (spoVD_2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
csci01011
]
HDCHBGLK_03443 (spoVD_2)
Peptidoglycan biosynthesis and degradation proteins [BR:
csci01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
HDCHBGLK_03443 (spoVD_2)
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GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
PBP_dimer_2
Thiaminase_I-like_N
Motif
Other DBs
NCBI-ProteinID:
QBF76027
UniProt:
B0NCD4
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All DBs
Position
complement(3374613..3376460)
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AA seq
615 aa
AA seq
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MAKQTKTFFKKRFSKRMQKKLVMLFVAIVLAFVFLVGRITYINAASGDKYTKVVLDQQQY
DSRTIPFKRGDIVDRNGTKMATSERVYNVILDVKVMMSDKDYIEPTIEVLKDCFGIEEDK
VRELMDKSPSSRYNILQKGVDYAKAKEFEKIDKDDKKYPDVKGIWLEEDYIRTYPYNTLA
SDVIGFTVDGNVGSNGIEASYNSILNGTDGREYGYLDDSSSFERTVKEADNGSTVVSTID
LQVQNIVEKHILEFNDEHKNETTPGEGSKNTAVIVMNPQNGEILAEASYPNYDLNNPRDM
SKYYSEEELAAMPDDEKIEKLNELWNNFCISDTYEPGSTFKPFTIAAGLETGILTGDENY
VCGGVLHVGDHDIHCSNRDGHGPQTLKQSLENSCNVALMEIGQSIGTEEFCRYQKLFGFG
EYTGIDLPGEGSTEGLLYTPENMDAASLATNAFGQNFNVTMTQMVAAFSSLINGGDYYKP
HVVKQIQDDNGNVTENRDPVLMKKTVSKETSDILKDYMLGVVQEGTGSLAAVEGYDVGGK
TGTAEKLPRGNGKYLVSFIGYAPQENPEVVVYVVVDEPNVPGQASSSYATELSSKIMTEI
FPYLGIEKSADAEGN
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacagacaaaaactttctttaagaaaagattttccaaacgaatgcaaaaaaag
ctagtaatgctcttcgtggcaattgtactagcttttgttttcttagttggcagaataacc
tatatcaacgcagccagcggagacaagtacacgaaggtggttctggatcagcagcagtat
gacagcaggaccattccttttaaaaggggagatatcgtggaccgcaacggtacgaagatg
gcaaccagcgaaagggtctataacgtgatcctggatgtgaaggttatgatgagcgataag
gattatatcgagccgacgattgaagtgctgaaggactgttttggaatcgaagaagacaag
gtacgggaactgatggataagagcccgtccagcagatataatatattgcagaaaggcgtg
gattacgccaaggcaaaggaatttgagaaaatagacaaggatgacaagaaatatccggat
gtgaagggaatctggctggaggaagactatatcaggacgtatccttacaacacgcttgcc
agcgatgttatcggctttaccgtcgatggaaacgtaggcagcaatggaatcgaggcatcc
tataattccatcctcaatggaacggatggaagagagtatgggtatctggatgatagttcc
tccttcgagcgtacggtcaaggaggctgataacggcagcacagtggtttctaccattgac
ctccaggtgcagaatatcgtggaaaagcacattctggaatttaatgatgagcacaagaat
gagacgactccgggcgagggaagcaagaatacggcggttatcgtaatgaatcctcaaaat
ggagagatccttgcagaagcctcctatccgaattatgacttgaacaatccaagggatatg
tcgaaatattactcggaagaagaactcgccgcaatgccggatgatgaaaagattgaaaag
ctgaatgaactgtggaataatttctgcatcagcgatacctacgagccaggctccacattc
aagccatttaccattgccgcgggactggaaaccgggattctgaccggggacgagaattat
gtatgcggcggcgtgcttcatgtaggcgaccacgacatccactgcagcaacagggatgga
cacggcccgcagactttgaagcagtctcttgaaaattcctgcaacgtcgcgctgatggaa
atcggccagagcattggcacggaagaattctgccgttatcagaaactatttggatttggg
gaatataccgggattgaccttccgggagaaggatctaccgaaggacttctgtatacgcct
gagaatatggatgcggccagccttgctaccaacgcatttggccagaactttaatgtgacg
atgacccagatggtggctgctttcagctcactgatcaatggaggggactattataagccc
catgtggtaaaacagatacaggatgacaacggcaatgtgacggagaacagggatcctgta
ttgatgaaaaagacggtatccaaggagaccagcgatatcttgaaagattatatgctgggc
gttgttcaggaaggtactggctccctggcagctgtagaaggctatgatgtgggcggtaag
acgggaacagcggagaaactgcccaggggcaacggaaagtatctggtatctttcatcgga
tatgcgccccaggaaaatccggaggtagtggtatatgtagtcgtagatgagccgaatgtg
ccgggacaggcctctagttcctatgcgacggaactgtcctccaagatcatgacggagatc
ttcccttatctgggaatagaaaaatcagcggacgctgagggaaattag
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