Clostridium scindens: HDCHBGLK_03561
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Entry
HDCHBGLK_03561 CDS
T06591
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
csci
Clostridium scindens
Brite
KEGG Orthology (KO) [BR:
csci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csci03032
]
HDCHBGLK_03561 (topA)
03400 DNA repair and recombination proteins [BR:
csci03400
]
HDCHBGLK_03561 (topA)
Enzymes [BR:
csci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HDCHBGLK_03561 (topA)
DNA replication proteins [BR:
csci03032
]
Prokaryotic type
DNA Topoisomerases
HDCHBGLK_03561 (topA)
DNA repair and recombination proteins [BR:
csci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HDCHBGLK_03561 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
Toprim_4
Zn_ribbon_recom
Zn_ribbon_8
Zn_ribbon_3
DUF7604
TcpQ
Lar_restr_allev
Zn_ribbon_GRF_2
Motif
Other DBs
NCBI-ProteinID:
QBF76144
UniProt:
A0A494WQ12
LinkDB
All DBs
Position
complement(3485611..3487695)
Genome browser
AA seq
694 aa
AA seq
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MARYLVIVESPAKVKTIKKFLGSNYVVTASNGHVRDLPKSQLGVDVEHDYEPKYITIRGK
GEILANLRKEVKKADKVYLATDPDREGEAISWHLSQALKLENKKTYRISFNEITKNAVKA
SLKNAREIDMDLVDAQQARRVLDRIVGYRISPLLWAKVKRGLSAGRVQSVALRIIADREE
EINAFIPEEYWTLDANLKVEGEKKILTAKFYGTEKKKMTIRSKEELEQILKEVDQADYSV
ADIKKGERIKKAPVPFTTSTLQQEASKALNFATSKTMRIAQQLYEGIDIKGNGTVGIITY
LRTDSTRVSEEADASVREYIASNYGKEYVAAGEAKEGADKKIIQDAHEAIRPTDVSRTPA
VMKDSLTRDQFRLYQLIWKRFVASRMRPARYETTSVKIAAGTYRFTVAASKIIFEGFRSV
YTEAGEEKEESNVLLKGLDMDSRLTKESFESKQHFTQPPAHYTEAALVKTLEELGIGRPS
TYAPTISTIIARRYVAKENKNLYLTEIGEVVNNIMKQSFPSIVDVNFTANMESLLDGVAE
GKVGWKTIIENFYPDLEKAVEKAEKEQEAVKIEDEVTDVICDQCGRNMVIKYGPHGRFLA
CPGFPECRNTKPYLEKIGVPCPVCGKDVVIRKTKKGRKYYGCEDNPNCEFMSWQKPSTKK
CPRCGSHMVEKGNKLLCSDEQCGYVENKEIIKNI
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcacgctatcttgtaatcgtggagtcgcctgcaaaggtgaagacaattaaaaaattt
ctgggaagtaattatgtggttaccgcatccaacgggcatgtcagggatctgcccaagagc
cagctgggcgttgacgttgagcatgattatgagccgaagtacattacaatacgggggaaa
ggagagatactggcaaatctgcgcaaggaagtgaaaaaagcagataaggtgtatctcgcg
actgacccggaccgggaaggagaggctatttcgtggcatttgagccaggccttgaagttg
gagaataagaagacttaccgcattagttttaatgagattacaaagaacgcagtaaaagca
tcccttaaaaacgcaagagaaattgatatggatctggttgatgcccagcaggcgagaagg
gttctggatcgaattgtcggatacaggatcagccctcttttgtgggccaaggtcaagaga
ggcttgagtgccgggcgggttcagtcggtggcgcttcgtattatcgcggaccgggaggaa
gagatcaatgcattcatcccggaagaatactggacgctggatgccaacttgaaagtagaa
ggagagaagaagattctgaccgcgaaattctacggcacagagaaaaagaagatgaccatc
cgttccaaggaagaactggaacagattctgaaagaagtggatcaggccgattattccgtg
gcagacattaaaaagggcgagcggattaaaaaggccccggttccttttaccaccagcacg
ctccagcaggaagcatccaaagcgctgaattttgccacctcaaagacgatgaggattgcc
cagcagctctatgagggaattgacatcaaagggaatggcaccgtcggaatcattacctat
ctgcgtacggattccaccagggtatcggaagaggctgacgccagtgtaagagaatacatc
gcgtctaattacggaaaagagtatgtggcagcaggagaagcaaaagaaggggctgacaaa
aagatcatccaggacgcccatgaggcgataaggcctacggatgtatcgcgcacgccggca
gttatgaaggattccctgaccagggatcagttccgtctgtaccagctgatatggaaacgg
tttgttgccagcaggatgcggcctgccagatacgagaccacgtccgtgaagatcgcggca
ggaacgtatcggtttacggtggcagcgtccaagattatcttcgaaggattccgttctgta
tatacggaggcaggagaagagaaggaagaaagcaacgtgctgctgaaaggccttgatatg
gattccaggcttaccaaagaaagttttgagtcaaagcagcatttcacccagccgccagcc
cattatacggaggcagcgctggtaaagacgcttgaggagctgggtatcggccgcccaagt
acttatgcgcctacaatttctacaattattgccagaagatatgtggccaaggagaataag
aacctttatctcacagagatcggcgaagtggtcaataatattatgaagcagtcctttccc
agcattgtggacgtgaacttcacagccaatatggaaagccttcttgatggggtggcagag
ggaaaagtaggatggaagacgattatcgagaatttctatccggatcttgagaaagccgtc
gaaaaagcggagaaggaacaggaagcagtcaagatagaagatgaggttacggatgtgatc
tgtgaccagtgcggccgcaatatggtcattaaatatggaccccatggacgtttcctggct
tgtccgggattcccggagtgcaggaataccaagccttatctggaaaagatcggcgtgcct
tgcccggtctgcggcaaggatgtggtgatccgtaagacgaagaagggacgaaaatattat
gggtgcgaagacaaccccaattgcgaatttatgtcctggcagaagccatcgacgaagaag
tgtccgaggtgtggaagccatatggtagaaaagggaaataagctgctttgcagtgatgaa
caatgcggatatgtggaaaataaagagattattaaaaatatttag
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