Chryseobacterium scophthalmum: ACLB9Y_01965
Help
Entry
ACLB9Y_01965 CDS
T11109
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
csco Chryseobacterium scophthalmum
Pathway
csco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACLB9Y_01965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csco03019
]
ACLB9Y_01965
03400 DNA repair and recombination proteins [BR:
csco03400
]
ACLB9Y_01965
Enzymes [BR:
csco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACLB9Y_01965
Messenger RNA biogenesis [BR:
csco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACLB9Y_01965
DNA repair and recombination proteins [BR:
csco03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACLB9Y_01965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
BrxL_ATPase
Cas3-like_C_2
DUF7022
Cullin_Nedd8
Motif
Other DBs
NCBI-ProteinID:
XMO02396
LinkDB
All DBs
Position
complement(460372..462273)
Genome browser
AA seq
633 aa
AA seq
DB search
MISAKDFNELKNKTLKHFWGYDQFRDSQEPVIDFVLNRKDTLVLLPTGAGKSLCYQLPAL
LQEGTCLVISPLLALMKDQVNQLKFRGIEAEYLSSELDEFDAEVIYNRCKDGLTKLLYVS
PERLTNKLFLQQIEEIQLSFIAVDEAHCISEWGQDFRPSYQNIKDFRKNNPEITCLALTA
TATPKVLDEIKTKLELKSPKIFQKSFKRDNIKLFSEEISDKYQKVFNILKYAKESGIIYV
RTRKDAELLTEFLHRHKIQNVDYFHAGLSTKEKNERQNFWNNSDQNVLISTNAFGMGIDK
DNVRFVIHFSPSQSIENYYQEIGRAGRDGKKSYAFMLWNKQEISNFDQILRNQIPNKAEF
LKIISYLYSKFQVAEFELPEKVFQLNTSGIQSFTKLSTAKIKNVLNFLHTQEIIFHNSNK
SLSSLELLIKPDEIDQLPQKDAYFIELLLRSISGITTHKVMFSEQNVSNKIGVSVHLIKE
RLKELQQKNYLEYIDGALASVKFLKPRDERAINGMYWNLFEHIQKNKIQKWEEMKFFIED
NQYCKMKLILSYFGEKNTKNCGQCAVCEKNKQSIFGKNVSLEIIKVLNKKPATIEEISIH
LQFHSKENILENLIFLLDSGKVKMLNFRTYSLV
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgatttccgctaaagattttaatgaacttaaaaataaaacccttaagcatttttggggt
tatgatcaattcagagattctcaagagccggttattgattttgttctcaacaggaaagac
accttagttcttcttccaaccggcgccggaaaatcattatgttatcagcttcccgcttta
ttacaagaaggaacttgtcttgtcatttcacctttattggcgttgatgaaagatcaggtt
aaccaattaaaattccgaggaattgaagcagagtatctaagttcggaactggatgagttt
gatgccgaagttatttacaacagatgcaaagacggtttaacaaaactattatacgtttca
cctgaaagactcaccaataaactttttcttcagcaaattgaagaaattcagctatcattt
attgcggtggatgaagcacattgtatttcagaatggggacaagatttcagaccaagttat
cagaatatcaaagattttaggaaaaacaatcctgaaattacatgtcttgcattaacagca
acagcgactccaaaagttttagatgaaattaaaactaagcttgaacttaagagtcctaaa
atttttcaaaaaagttttaaaagagacaatattaaactattttctgaagaaatttcagac
aagtatcaaaaggtttttaacatccttaaatacgctaaagaatcggggattatctatgtg
agaacccgaaaagatgctgaactgcttactgaatttcttcaccgacataaaattcagaat
gtggattatttccatgcaggattatcaacaaaagagaaaaacgaaagacaaaatttctgg
aacaacagtgatcaaaatgtattaatttccaccaatgcttttggaatggggatcgacaaa
gacaatgtacgtttcgtcattcacttctccccttctcagtcgattgaaaattattatcag
gaaatcggtcgtgccggaagagatggcaaaaaaagttatgcatttatgctttggaataag
caggaaatttcaaattttgatcagattttaagaaatcaaattcccaataaagcagagttt
ctaaagattatttcttatctctattctaaatttcaggtggctgaatttgagcttccagaa
aaggtttttcagttaaatacttcaggaatccaaagttttactaaactttcaacagcaaag
attaaaaatgttctgaatttccttcacactcaggagatcattttccacaacagtaacaaa
agcttatcatcactcgaacttctcattaaacctgatgaaatcgatcagcttccacagaaa
gatgcttattttatcgaactacttttacgttccatttcaggaattacgacacacaaagta
atgtttagcgagcagaatgtaagcaataaaataggagtaagtgttcatctgattaaagag
cgcttgaaagaattacagcagaaaaattatttggaatatattgatggagctttggcgagt
gtaaaatttctgaaaccacgagacgaaagagctatcaacggaatgtattggaatcttttt
gaacatattcaaaaaaataaaatccagaaatgggaagaaatgaagtttttcattgaagat
aaccaatactgcaaaatgaaattgatcctctcctattttggcgaaaaaaacactaagaac
tgcggacaatgcgccgtttgtgaaaaaaacaaacaatctatttttggcaaaaatgtttct
ttggagatcattaaagttttaaataaaaagcccgcaaccattgaagaaatttctatacac
ctacagtttcattctaaagaaaatattttagagaatcttattttcttattagattccgga
aaagtaaaaatgctgaattttagaacgtatagtttagtgtaa
DBGET
integrated database retrieval system
