Chryseobacterium scophthalmum: ACLB9Y_11595
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Entry
ACLB9Y_11595 CDS
T11109
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
csco Chryseobacterium scophthalmum
Pathway
csco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACLB9Y_11595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csco03019
]
ACLB9Y_11595
03009 Ribosome biogenesis [BR:
csco03009
]
ACLB9Y_11595
Enzymes [BR:
csco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACLB9Y_11595
Messenger RNA biogenesis [BR:
csco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACLB9Y_11595
Ribosome biogenesis [BR:
csco03009
]
Prokaryotic type
rRNA helicases
ACLB9Y_11595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XMO00509
LinkDB
All DBs
Position
complement(2580566..2582293)
Genome browser
AA seq
575 aa
AA seq
DB search
MNLFTETNLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDDTSRKIQFLVLCPTRELCLQITKDIKNYSKYMQNIKTTAVYGGSSIMDQIRSLK
EKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETIMKETPETKQT
FLFSATMSKEVERISKNYLTKPHRISVGSINEVKKNIKHEYYVAGYRQKKEALKRLIDSN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVDSLTHVVHYSLPDDPEVFVHRSGRTGRAGKDGISISLIKPEESRKLKQIKSV
TKIEIVEARIPTGEDIVKAQVAGVFENLLEVHEDFFEFDDSLIPDLSEFTKEQLVHKLLQ
FQLKDLALYYKDRHDLLEQKMSSRDDDRGGRDRDRGRDRDRGRDRDRGPRGDRDGRSDRG
ERRGDRGGKPRQRDENMTRFFFNLGKKDQLKKLDVLEIINKATSSKGNKRAEIGNIEILE
KFSFFEIEKSYKNELLGNIQSMKFKGKDMRAEEAN
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggagaccaatttaagtcctgatatccttaaggccattggcgaactg
ggttacgaaagcccgacagaaatccaaaaacagactatccctttcattctttcagatatt
cgcgatctaatcgcacttgcgcagacagggacaggcaaaacagcagcgttttcgcttccg
attttggatatgattgacgatacgagtcgcaaaatccaatttttggtgctttgtccgaca
cgagaattatgtcttcagattacaaaagacatcaaaaattattcaaagtacatgcagaac
atcaaaactacagcagtttacggtggaagcagtattatggatcagattcgttctttaaag
gaaaaaccacaaattattgtaggaactcctggaagagtaatcgatttgattaacagaaaa
gcattagacttttcagcaattcactggttggttttagacgaagcagatgaaatgctttca
atgggtttcaaagacgagttggaaaccattatgaaagaaactcctgaaacaaaacaaact
ttcttgttctcggcaacgatgagcaaagaagtggagcgtatttcaaaaaattatttgaca
aaacctcaccgtatttctgtgggttctattaacgaagttaaaaagaacattaagcacgaa
tattatgtggctggttaccgtcagaaaaaagaggctttgaagagattgatcgattcaaac
cctaaccaatactcaattattttctgtagaacaagaatggaaactcaggaagttgctgat
ttcttgatgcagaatgggtatgcagcagatgctcttcatggtgatctttctcaagcgcag
agagatacggtaatgaagaaattcagactgaaaaatatcgatattttggtggcgactgat
gttgcagctagaggattagatgtagattctttaactcacgttgtacattattctttacca
gatgatcctgaagtattcgttcacagaagtggtagaacgggtagagcaggaaaagacggt
atctctatttctttaattaaacctgaagaaagcagaaaactgaagcagattaaatctgtt
acaaagattgagatcgttgaagctagaattcctacaggtgaagatattgtaaaagctcag
gttgcaggtgttttcgaaaacttgttagaagtacacgaagatttctttgaatttgatgat
tcattgattcctgatctttctgaatttacaaaagaacaattagtgcacaaattacttcag
ttccagttaaaagatcttgctttgtactacaaagacagacatgatcttttggagcagaaa
atgagcagcagagatgatgacagaggaggaagagaccgcgatagaggaagagatcgtgac
agaggaagagaccgtgatagaggcccaagaggagatcgtgacggaagaagcgacagagga
gaaagaagaggcgatcgtggtggaaaaccaagacaaagagacgagaacatgactagattt
ttcttcaatcttggtaaaaaagatcagttgaaaaaattagatgttttagaaattatcaac
aaagctacttcaagcaaaggaaataaaagagctgaaattggtaatatcgaaattcttgaa
aaattctcattctttgagattgaaaaatcttataaaaatgagcttttaggaaatatccaa
tcaatgaagttcaaaggaaaagatatgagagctgaagaagctaactaa
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