Chryseobacterium scophthalmum: ACLB9Y_18105
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Entry
ACLB9Y_18105 CDS
T11109
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
csco Chryseobacterium scophthalmum
Pathway
csco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACLB9Y_18105 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csco03019
]
ACLB9Y_18105 (rnr)
03016 Transfer RNA biogenesis [BR:
csco03016
]
ACLB9Y_18105 (rnr)
Enzymes [BR:
csco01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACLB9Y_18105 (rnr)
Messenger RNA biogenesis [BR:
csco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACLB9Y_18105 (rnr)
Transfer RNA biogenesis [BR:
csco03016
]
Prokaryotic type
tRNA degradation factors
ACLB9Y_18105 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
S1CSD-TOTE-2
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
XMO01745
LinkDB
All DBs
Position
3963801..3965951
Genome browser
AA seq
716 aa
AA seq
DB search
MAKKKKYISQKNDHKLMEIGRLIMRFMNQNQTKVYNYKQISDGIDHKNPRQREMVIQALH
KLLSSQRIKETDKGKYSINLNIEGTLTGIIDFNQSGNAYVAVENLKDDIFIHSKNVKDAL
QGDKVLIVTYNFKGKKLEGSVLEVLERKRSEFVGTFQLVPHKEFGFVVCDKKTINTDIFI
PKGKINGAENGNKVVVKMTEWKPGDKNPEGEILQVLGNPGDHETEIHSILAEYGLPYEFP
EEVERDADKIDRTITDEEAAKRWDMRDVLTFTIDPKDAKDFDDALSMRKLENGNWEVGVH
IADVSHYVVPRTILDDEAYERATSVYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFE
LNDNAEIQKQWFGRTIIHSDRRFTYEEAQERIETKEGDLQEEINVLDRLAKIMRAGRIKN
GAITFDRSEVRFNLDENNQPIGVYFKISKDSNHLIEEFMLLANKKVSEFVSLKSGRPNEN
TFIYRIHDDPDPAKLEALRDFVSTFGYKMDLANTKKVAESLNTLLKDVKGKGEENMIETL
AMRSMSKAVYSTDPIGHYGLGFDYYSHFTSPIRRYPDLLAHRLLQHYLDGGKSPDRNELE
EKAKHCSAMERLAADAERDSIKFMQVKFMEKHLGETFTGVISGVAEFGFWVEIPENGAEG
LIKLRDLMDDSYTYDKATHAVYGSRTGNRYQLGDHVQIKVVKANLIQKQLDFKIVE
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaagaaaaaatatataagtcagaaaaatgatcataaattaatggaaatcgga
agattgatcatgagatttatgaatcaaaaccaaactaaagtatacaattacaaacaaatc
tcagacggaatagatcataaaaacccgagacagcgtgagatggtgattcaggctttgcac
aagctattgtcaagccaaagaatcaaagaaaccgacaaaggaaaatacagcatcaatctt
aatattgaaggtactttgaccggaattatcgatttcaatcaaagcggaaatgcttacgta
gccgtagaaaatctgaaagatgatattttcattcactcaaaaaatgtgaaagacgcttta
cagggcgataaagttttaattgttacctacaattttaaaggtaaaaaacttgaaggttct
gttttagaagttctcgaaagaaaaagatcagaatttgtggggactttccaattggttcct
cacaaagaatttgggtttgtagtttgcgataaaaagacaattaataccgatatttttatt
ccaaaaggaaaaataaatggtgctgaaaacggcaataaagtcgttgtaaaaatgacagaa
tggaaacccggagataaaaatcctgaaggagaaattttacaggttctaggaaacccggga
gatcatgaaacagaaatccactctattcttgcagaatacggtttaccgtacgaattccct
gaagaagtggaaagagatgccgataaaatagaccgcacaatcactgatgaagaagcagca
aaacgttgggatatgcgtgatgttttaacatttacaattgacccgaaagatgcaaaagat
tttgatgatgcattgtcaatgcgcaaattagaaaacggaaactgggaagtcggagttcac
attgcagacgtttctcattacgtggttccgagaactattttggatgatgaagcttacgaa
agagcgacttcagtctatttggtagaccgtgttgtaccgatgcttccggaagttttgagt
aatgatgtttgttcgcttcgtccgaatgaagataaatatactttctctgctgtttttgag
ttgaatgacaatgcagagattcagaaacaatggtttggaagaacgatcattcattcagac
agaagattcacttatgaagaagctcaggaaagaatagaaaccaaagaaggcgatttgcag
gaggaaatcaatgttttagacagattggctaaaattatgcgtgcaggtcgtatcaaaaac
ggtgcgattacttttgacagaagtgaggttagattcaatctagatgaaaataatcagccg
attggagtttactttaaaatcagtaaagattctaatcacctgatcgaagaatttatgttg
ctcgctaataagaaagtttcagaatttgtttctttgaaaagcggaagacccaatgaaaac
acatttatttacagaattcacgacgatccggatcctgcaaaactggaagctttaagggat
ttcgtttctacttttggatataaaatggatcttgccaataccaaaaaagtggcagaatct
ttaaatactttgttgaaagatgtaaaaggaaaaggcgaagaaaatatgatcgaaactttg
gcgatgcgaagcatgagtaaagcagtttattctacagatcctatcggtcactacggttta
ggattcgattattattcgcacttcacctctcctatccgtcgttatccggatttacttgca
cacagattgttgcagcattatttggatggaggaaaatctcccgacagaaatgaattggaa
gaaaaagcaaaacactgtagcgcaatggaacgtttggcagccgatgcagaaagagattct
atcaaatttatgcaggtgaaattcatggaaaaacatttgggagaaactttcacaggggta
atttccggagttgcagaatttggtttctgggtagaaattcctgaaaacggcgcggaaggt
ttaatcaaacttcgcgatttgatggatgattcttacacatatgataaagcaacacatgct
gtttacggatctcgtacaggaaacagatatcaattgggagatcatgttcagattaaagta
gtgaaagccaatttaattcagaaacagctcgattttaagattgttgagtag
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