Chryseobacterium scophthalmum: ACLB9Y_19560
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Entry
ACLB9Y_19560 CDS
T11109
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
csco Chryseobacterium scophthalmum
Brite
KEGG Orthology (KO) [BR:
csco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csco03032
]
ACLB9Y_19560 (topA)
03400 DNA repair and recombination proteins [BR:
csco03400
]
ACLB9Y_19560 (topA)
Enzymes [BR:
csco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ACLB9Y_19560 (topA)
DNA replication proteins [BR:
csco03032
]
Prokaryotic type
DNA Topoisomerases
ACLB9Y_19560 (topA)
DNA repair and recombination proteins [BR:
csco03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ACLB9Y_19560 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
VWA_3
Motif
Other DBs
NCBI-ProteinID:
XMO02025
LinkDB
All DBs
Position
4272891..4275467
Genome browser
AA seq
858 aa
AA seq
DB search
MSKNLVIVESPAKAKTIQKYLGKDFEVKSSFGHIRDLPKKGMGIDLETFSPDYEVSADKK
KLVTELKSAVKKAEMVWLASDEDREGEAIAWHLADELKLKPENRKRIVFHEITKNAILKA
IENPRDIDQNLVNAQQARRVLDRIVGFEMSPVLWKKVKPGLSAGRVQSVAVRLVVEREKE
IREFTPKASFKLDGIFLNKAMQEIAAKLKKDFEKEEEAEKFLELAKTVEFKVLNVETKPG
SRSASAPFTTSTLQQEASSRLGYNVTNTMRLAQRLYEEGFITYMRTDSVNLSQEAIEGAK
NQIISEYGAEYSSPRNYTTKSSSAQEAHEAIRPTDFSVKSIADVQLSKLYQLIYRRTLAS
QMANAKIEKTVIEIGNAKLPQHFEAQGEVIIFDGFLKAYGIVKTEDDDEENNEKLLPKVT
VGEVLSYKKITAQEKFTRPSARYTEAGLVRKLEELGIGRPSTYAPTIQTIQNREYVDKRE
IEPQVREVVKISLTNDKIKKEVLDEKFGGDKNKFVPTDIGEVVNDFLTNNFSEILDFGFT
ARVEESFDEIASGAQKWKEMMIDFYSKFHPRIADVEENADRANGERLLGVDPKTGKNVHA
RIGRFGAMIQIGEQDDEEKPIFASLLAGQNIATINLEDALELFKLPFELNSFEDQTVSVG
VGRFGPYVKWGETYISIPKGEDPLSIDQKRAEEIIAEKKLADAPIASYKGEPITKGTGRF
GPFIKYQSIFINVPKKYNFENLSQSDINELVEAKLEKEANRYIQQWEAEKISIENARWGP
IVKHGKNIYKIPKKKDDTKYEADELKDVSIDEVKKWITDQDPKAFAEKKKAAAKKAATTK
KTTTTAKKPAAKKPAAKK
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaatttagtaatcgttgagtcccccgcaaaagcaaaaactattcagaaatat
ttaggaaaggatttcgaggtaaaatccagtttcggacacatccgggatcttcctaaaaaa
ggaatggggattgacttggagaccttcagcccggattacgaagtttctgccgacaaaaag
aaattggtaacagaattaaagtctgccgtaaagaaagccgaaatggtttggcttgcttcc
gatgaagaccgtgaaggagaagctattgcttggcatttggcagatgaattaaaactgaaa
cccgaaaacagaaaaagaattgttttccacgagattactaaaaacgcgattcttaaagca
attgaaaacccaagagatattgatcaaaacttagtcaacgctcaacaggcgagaagagtt
ttagacagaattgtaggttttgaaatgtctccggtactttggaaaaaagtaaaaccaggt
ctttctgcaggtagagtacagtcggttgctgtacgattagttgttgaaagagaaaaagaa
attcgggagtttactccaaaagcaagcttcaaactagacggaattttcttaaataaagca
atgcaggaaatcgctgctaagcttaaaaaagatttcgaaaaagaagaagaagctgaaaaa
ttcttagaactggcaaaaacagttgagtttaaagttttaaatgtagaaacaaaaccggga
agccgttctgcgtctgcaccgtttacaacttctacacttcagcaggaagcctcttcaaga
ttaggttacaacgtgaccaacacaatgcgtcttgcacaaagactttacgaagaaggattc
attacctatatgagaaccgactcggtaaacctttctcaggaagctattgaaggcgcaaaa
aatcaaattatatcagaatacggagcagaatattcttctccgagaaattatactacaaaa
tcttcatcggctcaggaggctcacgaagcgatccgtccgacagatttttctgtaaaatca
attgcagatgtgcagttaagcaaattgtaccagttgatttacagaagaacattggcttct
cagatggcaaatgctaaaattgagaaaacggttatcgaaattggtaatgccaaacttcca
cagcatttcgaagctcagggagaagttattatttttgatggtttccttaaagcatacgga
atcgtaaaaacagaagatgatgatgaggaaaacaacgaaaagttgttgccaaaagtaacc
gttggtgaagttttaagctataaaaaaattacggcacaggaaaagtttacaagaccgagt
gcaagatatacagaagccggattggtaagaaaactggaagaattgggaattggtcgtcca
tcgacttatgctccaaccattcagacgattcagaaccgtgaatatgttgataaaagagaa
attgagccacaagtaagagaggtggtgaaaatctctttaacaaatgataaaatcaaaaaa
gaagttcttgacgaaaaatttggaggcgacaaaaataaatttgttcctactgacatagga
gaagttgtgaatgatttcttaacgaataatttcagtgaaattctagacttcgggtttact
gcaagagtagaagaaagttttgacgaaattgcaagcggtgcccaaaagtggaaagaaatg
atgatcgatttctactcaaaattccatccaagaattgccgatgtagaagaaaatgcagac
cgtgcgaatggtgaaagattattaggtgtagatccgaaaaccggtaaaaatgttcatgca
agaatcggaagatttggagccatgattcaaattggagagcaggatgatgaagaaaaacca
attttcgcgtcattattggccggacaaaatattgcgaccatcaacttggaagatgctttg
gagctattcaaattaccttttgaattaaatagttttgaagatcagactgtatcagtcgga
gttggaagatttggtccttatgtaaaatggggtgaaacctacattagtattcctaaaggt
gaagatccactttctatagatcaaaaacgtgcggaagaaatcattgctgaaaaaaaatta
gccgatgcacctattgcatcttacaaaggtgagccaattacaaaaggaacaggaagattt
ggtcctttcattaagtatcaaagtattttcatcaacgttccgaagaaatataacttcgaa
aacctttctcaaagcgacatcaacgaattggtagaagccaaactggaaaaagaagccaac
cgttacatccaacagtgggaagctgaaaaaatctcaattgaaaatgcaagatggggtcct
atcgtaaaacacggaaagaatatttataaaattccaaagaaaaaagacgataccaagtat
gaagcagacgagctgaaagacgtttctatcgatgaggttaaaaaatggattaccgaccaa
gatcctaaagcttttgcagagaaaaagaaagctgcggcgaagaaagcggctacgactaag
aagacaacgacaacagcgaaaaagcctgcggctaagaaaccggcagcgaagaaataa
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