Thermoclostridium stercorarium subsp. stercorarium DSM 8532: Clst_0281
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Entry
Clst_0281 CDS
T02527
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
csd
Thermoclostridium stercorarium subsp. stercorarium DSM 8532
Pathway
csd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
csd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Clst_0281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csd03021
]
Clst_0281
03400 DNA repair and recombination proteins [BR:
csd03400
]
Clst_0281
Enzymes [BR:
csd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Clst_0281
Transcription machinery [BR:
csd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Clst_0281
DNA repair and recombination proteins [BR:
csd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Clst_0281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
WHD_MCM
DUF3884
Motif
Other DBs
NCBI-ProteinID:
AGI38384
UniProt:
L7VKP4
LinkDB
All DBs
Position
325139..328678
Genome browser
AA seq
1179 aa
AA seq
DB search
MFELKDFEAIRIGLASPEKIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPTKDWEC
HCGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEKVLYFAAYVVIDPGTTPLSKKQILSEKEYRDSLEKFGNNFRAGMGAEAIKELLQ
EIDLDALAEELRAEIEESTGQKRIRAIKRLEVVEAFRQSGNKPEWMILDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPEIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLWQCGLPKE
MALELFKPFVMKRLVEKGLAHNIKSAKRMVERVRTEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIQLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARFLMLSANNLL
KPQDGKPVTVPTQDMVLGSYYLTVEKENDKGEGKAFSSPEEAIMAYENGYVSLHAKIKVK
MTRMVDGVKKSKVIETTVGKLIFNEAIPQNLGFVDRTNPETMFNLEVDFLVGKKELSRII
ERCIKVNGTHKTALVLDEIKRLGFKYSTKGAITIGISDMIIPEIKQRYLEETDKKIELIT
KQYRRGLITDEERRNAVINAWNKTTEDVKNALIASMDKFNPVFMMSNSGARGNINQIRQL
AGMRGLMADTAGKTIEIPIRSNFREGLNVLEYFISTHGARKGLADTALRTADSGYLTRRL
VDVSQDVIVREEDCHTEDGITVTDIVSSGEKIESLEERITGRYAAEDIIDPETKEVLVRH
HEMIDSDMAQLIVSKGINKVKIRSVLTCRTRNGVCAKCYGLNLATGEPVNVGEAVGIIAA
QSIGEPGTQLTMRTFHTGGVAGEDITQGLPRVEELFEARKPKGLAIITEISGVVTIKDTK
KKREVIVTNESGEAQTYLIPYGSRLKVSDGQRVEAGDELTEGSVNPHDILKIKGIEAVQS
YLLSEVQKVYRLQGVDINDKHIEIIIRQMMKKVKVEESGDTRLLPGSLVDMFEFEDENAK
AIAEGKRPAEGKRALLGITKAALATDSFLSAASFQETTRVLTEAAIKGKTDPLLGLKENV
IIGKLIPAGTGMNRYRDIEIEAGASDTAENSEETQLEKL
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgaattaaaagattttgaagccatacgaattggtctggcttctcctgaaaaaatc
cgtgaatggtcccgcggggaagtgaagaagcctgaaactataaattacaggaccctaaaa
cccgagagggatggtttgttctgcgaaagaatcttcgggcctacaaaggactgggaatgt
cactgcggaaaatacaaacgcatacgctataaggggattgtctgtgacagatgcggtgtt
gaagtaacgagatccaaggtaagacgcgaaagaatggggcatatagaactggctgcacca
gtttcacatatatggtatttcaaaggtatccccagccgtatggggttattgctcgacatg
tctccaagggctttggagaaggtattgtattttgccgcatatgttgttattgatccggga
acgactccgttgtccaaaaagcagattctcagtgaaaaggaatacagagacagccttgaa
aaattcggaaacaatttcagggccggcatgggcgcggaagcaataaaggaactgttgcag
gaaatagatttggatgcccttgcggaagaattaagggcagagattgaggaaagcacgggc
cagaagaggataagggcgattaaacgccttgaagttgtggaggcattccgtcagtcgggt
aataagcccgaatggatgatcctcgacgttatacccgttatacctcccgaattgcgcccg
atggttcagcttgacggcggacgcttcgcaacaagtgatttaaacgatttataccgccgt
gtaatcaacaggaacaacaggttaaagaaattactggatctcggcgctcctgaaataatc
gtacgcaatgaaaaaagaatgctccaggaagcggttgacgctttaatagacaacggacgc
cgcggccgtcctgtaaccggtcccgggaacagacccttaaaatcgctttccgacatgctt
aaaggtaagcagggacgtttccgtcagaaccttctgggtaagcgtgttgactactcagga
agatcggttattgttgtcggtcctgagcttaagctgtggcagtgcggtttgccgaaagag
atggctctggaactgtttaagccctttgtaatgaaacggctggtggaaaaagggcttgcc
cataatatcaaaagcgcaaagagaatggttgaacgtgtgcgtacagaagtttgggacgtg
ctcgaagaggttatcaaggagcaccctgtgcttctgaaccgtgcacctacgttgcaccgt
cttggtattcaggcgttcgaacccgttcttgtcgaaggtcgtgccattcagttgcatccg
ctggtatgtacggcgtacaacgctgactttgacggtgaccagatggccgttcacgtaccg
ctgtctgcggaggcacaggcggaggcaagatttctgatgctttcggccaataacctgctg
aagccgcaggacggcaagccggtaaccgttcccacgcaggatatggtactgggaagttac
tacctgaccgttgaaaaggaaaatgacaaaggagaaggcaaggctttctcatcacctgaa
gaagccataatggcgtatgaaaacggctacgtgtcactgcatgcgaagataaaggttaaa
atgaccagaatggtcgacggagtgaaaaagtcgaaggtaattgaaaccacggtcggtaag
cttattttcaacgaggccataccgcaaaacctcggctttgttgacagaaccaatcccgaa
acaatgtttaaccttgaagtggatttcctcgtaggtaagaaagaactgagcagaataatt
gaacgatgcatcaaagttaacggtacacataagacagcgcttgtgctggatgaaataaag
agacttgggtttaagtattcgaccaagggtgcgattacaataggtatttcggatatgatt
attcccgaaatcaagcagagataccttgaagaaacggacaaaaagattgaattgataaca
aaacaataccgccgcggacttataaccgacgaggaaagaagaaatgcggtcataaacgca
tggaataagaccactgaagatgttaagaatgcgcttatcgccagcatggacaaattcaat
ccggtgttcatgatgtcgaactcgggtgcccgcggtaatatcaaccagattcgtcagctt
gccggtatgcgcggacttatggcggataccgcgggtaagaccattgagattcctatccgc
tccaacttccgtgaaggtttgaacgttctggaatatttcatatccacccacggtgcaaga
aagggacttgcggatacggctcttagaaccgcggactcaggttatctgacccgacgcctt
gttgacgtaagccaggatgttatagtgcgtgaagaagattgtcataccgaggatggtatt
actgtaaccgatatcgtaagcagcggtgaaaagattgaaagccttgaggaaagaattacg
ggaagatatgccgccgaagacataatcgatcccgaaaccaaagaggttcttgtaaggcat
catgaaatgattgacagcgatatggcgcagttaatagtatcaaagggaatcaataaagtg
aagatccgttcggtactgacctgccgtacaagaaacggcgtatgcgctaaatgctatgga
ctgaaccttgcaaccggagaaccggtcaatgtgggcgaagctgtaggtataatagccgct
cagtccataggagaacccggaacgcagttaacgatgcgtacgttccacaccggcggtgtt
gccggagaagacatcacccagggtctgccgcgcgtggaagagttgtttgaggcaagaaaa
ccgaaaggacttgccataataaccgaaatatcaggcgttgtgacgataaaggacacaaag
aagaaacgcgaagtaattgtgacgaacgaatcgggtgaagcgcagacctaccttatcccg
tacggttcaaggctgaaggtaagcgacgggcagagggtggaagccggtgatgagctcacc
gaaggttcggtcaacccgcacgatattctgaagataaagggtattgaggcagttcagtcg
tacctgcttagtgaagtgcagaaggtttacagactgcagggtgttgatattaatgacaag
catattgaaattattatcaggcagatgatgaagaaggttaaggttgaagaatcaggagat
acgagactgttgcccggaagccttgttgacatgttcgagtttgaggatgaaaacgccaag
gcaatagccgaaggcaagagaccagccgaaggaaagagagctctccttggtattacaaag
gctgcactggctaccgattcattcctgtcggcagcgtctttccaggaaactacaagagtt
ctgaccgaggctgccattaaaggtaagaccgatcctctgctgggtcttaaagagaacgtt
atcatcggaaaactgatacccgccggaacaggtatgaacaggtaccgcgacatagaaatt
gaagccggagcatctgatacggcggaaaacagcgaagaaacccagcttgaaaaactgtaa
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