Thermoclostridium stercorarium subsp. stercorarium DSM 8532: Clst_1019
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Entry
Clst_1019 CDS
T02527
Name
(GenBank) DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
csd
Thermoclostridium stercorarium subsp. stercorarium DSM 8532
Pathway
csd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csd00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Clst_1019
09124 Replication and repair
03420 Nucleotide excision repair
Clst_1019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csd03021
]
Clst_1019
03036 Chromosome and associated proteins [BR:
csd03036
]
Clst_1019
03400 DNA repair and recombination proteins [BR:
csd03400
]
Clst_1019
Enzymes [BR:
csd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Clst_1019
Transcription machinery [BR:
csd03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Clst_1019
Chromosome and associated proteins [BR:
csd03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Clst_1019
DNA repair and recombination proteins [BR:
csd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Clst_1019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
ResIII
DEAD
PDDEXK_1
PhoH
DUF7414
Motif
Other DBs
NCBI-ProteinID:
AGI39092
UniProt:
L7VN18
LinkDB
All DBs
Position
complement(1151905..1154286)
Genome browser
AA seq
793 aa
AA seq
DB search
MEPVKINVSVRELVSYSIPGEEHFFSFVSAKEGIEGHMFIHGLLKQRTEPFGIYRQEIPV
STTFAHDIFLLQISGRLDGLIERNGNFTLCEIKTTDKPLDTLDESDNPAHWAQGRCYAYI
VAKEKGLDKIGVMLLYLHRQSREIRVFEETLTFGELERFFNSLVFPFIYGLKKRYDWQHL
RNVSIKELTFPFPDFRKGQRIMSGAVYRAIRDGKKQFIQAPTGIGKTIGALFPAIKAMGE
GHVDKIFYLTARNTTQAEALKAYKMLAEKGLRLKTLQITAKEKVCFMPGKQCVEEECPYI
FEYMQRSRSVVSNAVSRTDLFSREFIELTAKENGLCPFELSLDLSTQADLIICDYNYVFD
PRVYLRRFFQDKTDENICLLIDEAHNLPERAREMFSAELKRSMVRIVYHKLKNTLPYLAN
SLKKVRKALLSYAAKVSPVSGKKPYPQVTSDSEPPKELTAPIDNFIYLAEGVLNDETPYP
FKEELAALFFEMVHFSRIFDLYGENYATIYSREKGDFSVKLFCVDPAPMLKKRTENSKSS
IFFSATLSPPSYFREILGGNEGDGFIILPSPFPRENLYLYVDNTVSTRFRHRAGALSSIV
ERIHECVSVKTGNYMVFFPSFEYMQKAAAEYMNRFPGDRILIQEQDMDENRRAEFLASFS
EYGKETLIAFVVMGGIFSEGIDLKGECLSGVIIVGVGLPQVCEERDIIKKYYQKKNGKGF
EFAYTYPGLNKVQQAAGRVIRSEHDRGFVVLIDDRFTTPLYLKIMPREWFPLKTSDNGTD
LIGELKKFWKCMA
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggaacctgttaaaataaacgtttcggtgcgtgagctggtttcatattctatccccggc
gaggagcactttttttcttttgtttccgcaaaagaaggcattgagggccatatgttcata
cacgggctgctgaaacagcggaccgaaccctttggaatttaccggcaggaaatacccgta
tccaccaccttcgcccatgacattttcctgctgcagatttcaggaaggcttgacgggctt
atcgaaagaaacggaaatttcaccctttgcgagattaagaccaccgacaaaccgctggac
acgctggacgaatcggataacccagcccactgggcgcagggacgctgctatgcctatatc
gtggcaaaagaaaaaggccttgacaaaattggcgtaatgcttttgtaccttcaccgccaa
agcagggaaatccgcgtttttgaagaaacactcactttcggcgaactggaaagattcttt
aattcccttgtttttccgtttatctacgggcttaaaaagcgctatgactggcagcatttg
cgtaatgtctcaataaaggaactgacctttccgttccccgatttccggaaaggccaaaga
ataatgagcggagctgtttacagggcgatacgggacggcaaaaaacagtttatccaggca
cccacaggcataggaaaaaccatcggagcgctgtttccggcgataaaggcaatgggcgaa
ggccatgtggataagattttctacctgaccgcaaggaatacaactcaggcggaagcactg
aaagcatataaaatgttggccgaaaagggactgaggcttaaaacgttgcagattaccgca
aaggaaaaggtgtgcttcatgcccgggaaacagtgcgtggaagaggaatgtccgtatatt
ttcgaatacatgcagagatcaaggagtgttgtttccaatgccgtaagccggacagacttg
ttcagcagggaatttatagagctaaccgcaaaggaaaacggtctgtgcccttttgaactt
tcccttgaccttagcacccaggctgatctcataatatgcgattacaattacgttttcgat
ccgagggtttatctcaggagattctttcaggacaaaacggatgaaaatatctgtcttctg
atagacgaagcccacaaccttcctgaaagggccagggaaatgttttccgcggaactgaaa
cgctcaatggtaaggatagtttatcacaaactaaaaaacacgctgccgtaccttgccaat
tctttgaaaaaggtgcggaaggcacttctgtcatatgccgcaaaagtatcaccggtatcc
ggaaaaaagccttatccgcaggtgacgagcgattctgagccgccaaaggaattgacagcg
ccgatagacaactttatctaccttgcagagggcgtattaaacgacgaaaccccatatccg
ttcaaggaggaactggcggcgttgttttttgaaatggtacacttttcaaggatttttgat
ttgtacggtgaaaactatgccacaatttacagccgggaaaaaggggatttctcagtaaag
cttttctgcgttgatccggcgccgatgctgaaaaaacgcaccgagaattcaaaaagctcg
atctttttctcggctacattatcccctccgtcatatttcagggaaattctggggggaaac
gaaggagacggttttataatccttccgtcgccatttcccagggaaaacctgtatctgtac
gtggacaataccgtatcaaccagattcaggcacagggcgggcgccctttcaagtatagtt
gaacgcattcacgaatgcgtcagtgtcaaaaccggtaactacatggtcttcttcccgtca
tttgaatatatgcagaaggccgcagccgaatatatgaacagatttcccggggacagaatt
cttattcaggagcaggacatggacgaaaaccggcgtgccgaatttcttgccagtttttcg
gaatacgggaaggaaaccctgatagctttcgtcgtaatgggcggcatattttcagaagga
attgatcttaaaggagaatgcctttcgggtgtgataattgtgggggtggggcttccgcag
gtatgcgaagaaagggatataataaaaaaatattaccagaaaaagaacggcaaaggcttt
gaattcgcatacacctatccggggcttaacaaggtccagcaggccgcagggcgcgtaata
cggtcggaacatgacagaggttttgttgtacttatagatgacaggtttacaacgccgctt
tatcttaaaataatgccccgggaatggtttccgttgaaaacctcagacaacggcactgat
ttgatcggggaactgaaaaaattctggaagtgtatggcgtaa
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