Thermoclostridium stercorarium subsp. stercorarium DSM 8532: Clst_1206
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Entry
Clst_1206 CDS
T02527
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
csd
Thermoclostridium stercorarium subsp. stercorarium DSM 8532
Pathway
csd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Clst_1206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csd03019
]
Clst_1206
03016 Transfer RNA biogenesis [BR:
csd03016
]
Clst_1206
Enzymes [BR:
csd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Clst_1206
Messenger RNA biogenesis [BR:
csd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Clst_1206
Transfer RNA biogenesis [BR:
csd03016
]
Prokaryotic type
tRNA degradation factors
Clst_1206
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
S1_RRP5
RPA_C
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
AGI39272
UniProt:
L7VJI5
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All DBs
Position
1356623..1358884
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AA seq
753 aa
AA seq
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MLEERKERIKGFIHDSSYHPLTFEELVVSLDVPKEDIELFRKCLDELEQEGHIYKTKKNR
YVAPEKIGLVTGTFQGHERGFGFVLPDEPDQSDIFIQSDRVKGAMDGDRVIARIVKFYND
DRHSEGEIVKILSRANDKIVGTFEKSYSVGYVVPDHRRIKGHIIVPLDRSMGAKPHQKVV
VQITRYPEPERNAEGQIIEILGDADTTDVEALSILKAYKIPVEFPDEVLQEARSIPQELT
PKDYAGRRDLRNLTMVTIDGEDARDLDDAVSLEITGNGNYLLGVHIADVSHYVKENSPLD
KEALKRGTSVYFPDRVIPMLPKELSNGICSLNPKVDRLAFSVFMEIDPLGRVINHEIVES
VINVNERMTYTDVYKILEERDQDLIERYRPLVPMFEKMKELALILMKRRSLRGAIDFDFE
ETKITVDENGKPVNIGKYEITIANKIIEEFMLLCNETVSEHFYWADIPFVYRIHEDPDPD
KIKRLNEFLFNFGVRIKGSGHVHPRALQDVLDKVKGTPQERIISTMMLRSLQKAKYSDEH
TWHFGLAADYYSHFTSPIRRYPDLIIHRIMKEYLHGKFDEQRNEHYSAILPDVTKHCSER
ERSAEEAEREYEAKLKAVYMQEHIGETFTGIVSGITSFGMFVELENTVEGLIRLTSMDDD
FYEYDEKMQVLIGVRTGRIYRIGDTVEVVVTNADPKTRQVDFVLTVNAREADPYAEDSNG
NGMKKRGKSGKKKKNTDNKVLEHINGKKKKRKK
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgttagaggaaagaaaagagcgaattaagggatttatacacgatagctcatatcaccca
ttgacatttgaagagcttgttgtatcgcttgacgtaccaaaggaagacattgagcttttc
agaaaatgcctggatgagcttgaacaggaagggcatatatataaaaccaaaaagaaccgt
tatgttgctcccgaaaaaatcggccttgtaacaggaactttccagggccatgagcgcggg
tttggctttgtgttgcctgacgagcccgatcagagtgatatattcatacaaagcgacaga
gttaagggagctatggacggcgatcgggttattgcccgtattgtaaaattttataatgac
gacaggcattcggaaggagaaattgtcaaaatcctttcccgcgccaacgataaaatagtc
ggcacatttgaaaaaagctattcggtaggttacgttgttcccgatcacaggagaataaag
gggcatatcatcgtaccccttgacaggtcaatgggtgcgaaaccgcatcagaaagttgtt
gttcaaataaccagatacccagaacccgaaagaaatgcagagggtcagattattgagata
cttggagatgcggatacgacggacgttgaagcactttcaatcttgaaagcatataaaata
cccgtcgagtttccagatgaggttttacaggaagccagaagcataccgcaggaattaact
cccaaagactacgccggcagacgggatttacgtaatttaacaatggttaccattgacggc
gaagatgcaagggatttggatgatgctgtttcccttgaaattaccgggaacgggaactat
ctcctcggtgttcatatagcagacgtatcccattatgtcaaagaaaactcgccactggac
aaagaagcgttaaaaaggggaaccagcgtttatttccccgacagggttattcctatgctt
ccaaaggagttgtcaaacggcatatgcagccttaatcccaaagttgaccgtcttgccttt
tcagtttttatggaaattgaccccttaggccgtgtaataaaccatgagatcgttgaaagc
gtaattaacgttaatgaacggatgacatataccgatgtgtataaaatacttgaagaaagg
gatcaggatttaattgaaagatacaggccgctggttccgatgtttgaaaaaatgaaggaa
ctggccttaatattgatgaaaaggcgcagcctgagaggtgctattgattttgactttgaa
gaaacaaagattaccgtggatgaaaacggcaagccggtaaatataggaaaatatgaaatt
acaattgcaaacaagataatcgaagaattcatgctgctgtgcaacgaaacggtttccgaa
catttttactgggccgacataccgtttgtttaccgtattcacgaagatcccgatcccgat
aagatcaaaaggctgaatgagtttttgtttaatttcggagtcagaattaaaggcagcggc
catgtgcatccgagagctttgcaggatgttcttgacaaagttaaaggaacgccgcaggaa
agaattatcagtacaatgatgttgagaagcttacagaaggcaaagtacagcgatgagcat
acgtggcatttcggccttgccgcggattattactcccattttacatcaccgataagaagg
tatcctgatctgataatacacagaataatgaaggagtatctgcacggaaaattcgacgaa
caaagaaacgaacattactcggctattcttcctgatgttactaaacactgttcagaaagg
gaaagaagcgcagaggaggccgaaagggaatatgaagcgaagctgaaagccgtatatatg
caggagcatataggggaaaccttcaccggaattgtttcgggcataacctcatttggcatg
tttgtagagcttgagaataccgtagaaggtttgatacggcttaccagcatggacgatgat
ttctatgagtatgatgaaaaaatgcaggttctcattggagtaaggacaggcaggatatac
cgtataggtgatactgtcgaagttgtggttacaaatgccgatccgaaaacaagacaggtg
gattttgtactgacagtgaacgcacgtgaggcagatccttacgcggaagattcaaatggc
aatggcatgaaaaaacggggcaagtcaggcaaaaagaaaaagaacacggataataaagtt
ttggaacacataaacgggaaaaagaaaaaacgaaagaaataa
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