Thermoclostridium stercorarium subsp. stercorarium DSM 8532: Clst_2113
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Entry
Clst_2113 CDS
T02527
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
csd
Thermoclostridium stercorarium subsp. stercorarium DSM 8532
Pathway
csd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Clst_2113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csd03019
]
Clst_2113
03016 Transfer RNA biogenesis [BR:
csd03016
]
Clst_2113
Enzymes [BR:
csd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Clst_2113
Messenger RNA biogenesis [BR:
csd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Clst_2113
Transfer RNA biogenesis [BR:
csd03016
]
Prokaryotic type
tRNA degradation factors
Clst_2113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
KH-I_KHDC4-BBP
RBD-FIP
OB_RRP5_4th
S1_RRP5
GvpL_GvpF
Motif
Other DBs
NCBI-ProteinID:
AGI40142
LinkDB
All DBs
Position
complement(2393877..2396105)
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AA seq
742 aa
AA seq
DB search
MLYIIKNKNNDVVNRWCRSSEKRVPVPEFSSLIFSPRSQHQERMLRGDMKREFSIDVAGR
KLTVEVGQLAQFANGSALVRYGDTVVLSTATMAPEPREGIDFFPLNVDYEEKLYSVGKIP
GGFIKREGKPSDSAILTARVIDRQIRPRFPKDLRNDVSVVNMVLSVEQDNSPEFAAIIGT
IVSLCISDIPFNGPIAGVILGLVDGEVVINPTLEQRKKSRMYVTLSADREKIVMIEAGAN
EVPEDVMMQAIRKGHEEIRRLIDFIDGIVKEVGKEKITYVSMAVPQEIYDEVESLCKEEL
TNALMTADKAEREKNVEEISKKVHETLDEKYPEAVTQISDALYKLQRKIVRDKLLHEKKR
VDGRGLMDIRPLHAEVGILPRTHGSALFQRGHTQVLTNVTLGPLGDVQLLDGVDVEETKR
YMHHYNFPGFSVGEAKPARGPGRREIGHGALAERALEPVIPPESEFPYAIRLVSEVLMSN
GSTSQASVCGSTLALMDAGVPIREPVAGISAGLVVDEENPDNFITFIDIQGIEDFFGDMD
FKVAGTKNGITAIQVDIKVDGLTYEMVEQAFEITRQGRLKILNDVILKVIDKPRDHLSPY
APKVFTTTIDIDKIREVIGPGGKVIQRIIADTGVKIDIEDDGKVYVSTSDEEAGKRAIEM
IEGIAGEVKIGQQFTGKVTRIMNFGALVEFLPGKEGMVHISKLSNRRVRKVEDVVKVGDR
IPVKVIAIDKQGRVNLSMKDCK
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
ttgttatatataataaaaaataaaaacaatgatgttgtgaacaggtggtgcagaagttca
gagaagagagttccggttccggaattttcttccctgatcttttcaccccgttcacaacat
caggaaaggatgttgagaggagatatgaagagagagttttcgattgatgtagccggaaga
aagttaactgtagaagtcggccagcttgcgcagttcgcaaatggctcagctttggtaaga
tacggggatacggtggtgctgtcaaccgctacaatggctccggaaccaagggaaggaata
gattttttcccgctcaatgttgattatgaagaaaaactgtattccgtcggaaaaatcccc
ggtggttttattaaaagagagggtaaaccttcagacagcgcaatacttaccgcaagggta
atagatcgccagatacgtccaaggtttccgaaggatctcagaaacgatgtatcggtagta
aacatggtgctgtcggttgaacaggataattcacctgaatttgctgcaattattggaaca
attgtgtcactgtgcatttcggatattccgtttaacgggcctatcgcaggtgtgattctg
ggacttgtagacggtgaagtggtaataaacccgacgctggaacagcgcaagaaaagccgg
atgtatgtaactctatccgccgacagggaaaagattgtgatgatagaagcgggtgcgaat
gaagtccctgaagatgtaatgatgcaggcgataaggaaaggccatgaggaaataagaagg
ctgattgactttatcgacggcattgtaaaagaggtaggaaaggaaaaaatcacctacgtt
tccatggcagtgcctcaggaaatctatgatgaagttgaaagcctctgtaaggaagagtta
accaatgcgctcatgactgcggataaggccgaacgggagaaaaatgtggaagagatatcc
aagaaggtccacgaaacccttgacgaaaaataccctgaagcggttacgcagatttccgat
gcgctttacaagctgcaaaggaagattgttcgtgataagttactgcatgaaaagaaacgt
gtggacggaagaggcctgatggatataaggccgcttcacgccgaagtgggaatattaccg
aggacgcacggttcggctctgttccagagaggacatacgcaggttcttacaaacgtaacc
cttggtccccttggagacgtccagctgctggacggtgtggatgtggaagagacaaagcgt
tatatgcaccactataatttccctggtttcagtgtgggcgaagcaaagcctgcccgcggt
cccggaagaagggaaatcggtcatggtgctcttgcagagcgtgcccttgagccggttatt
cctccggaatcagaattcccgtatgcaatccgccttgtttctgaagttttaatgtctaac
ggttcgacttcgcaggcaagtgtctgcggaagcactctggccttgatggatgcgggtgta
cccatcagggagccggttgcaggaatatccgcagggcttgttgtggatgaggaaaatccg
gataattttataacattcatagatatccagggaattgaagactttttcggagacatggac
ttcaaggtggcaggaacgaagaacggcattaccgccatacaggtggatataaaagttgac
gggcttacttatgagatggtagaacaggcttttgaaattacgcggcagggaaggctgaag
atactgaatgacgtaatcctgaaggtaatagacaagccaagggatcatctgtctccttat
gcgccgaaagtgtttactacgacgatagatattgataaaatccgtgaggttatcgggccg
ggcggtaaggttattcaacgtattatcgccgataccggcgtaaaaatagacattgaagat
gacggaaaggtttatgtgtccacgtcggatgaagaggcaggaaagagggcaattgaaatg
atagagggaattgcgggcgaagtaaaaattggccagcagttcaccggtaaggtaacgcgt
atcatgaatttcggcgctctcgttgagttcctccccggaaaggaaggaatggtgcacatt
tcaaaactgtccaacagacgtgtaaggaaagtggaagatgttgtcaaggtgggagacaga
atacccgttaaggtaatagcaatcgataagcagggaagagtaaatctttcaatgaaggat
tgcaaataa
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