Thermoclostridium stercorarium subsp. stercorarium DSM 8532: Clst_2183
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Entry
Clst_2183 CDS
T02527
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
csd
Thermoclostridium stercorarium subsp. stercorarium DSM 8532
Brite
KEGG Orthology (KO) [BR:
csd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
csd03016
]
Clst_2183
Enzymes [BR:
csd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Clst_2183
Transfer RNA biogenesis [BR:
csd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Clst_2183
Prokaryotic type
tRNA splicing ligases
Clst_2183
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AGI40209
UniProt:
L7VUH9
LinkDB
All DBs
Position
complement(2466400..2467506)
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AA seq
368 aa
AA seq
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MILVKGKYNTAKIFTCNVESGALDQIKELCDQEFVKDSIIRIMPDVHEGIGCTIGTTMTI
TDKIVPNLVGVDIGCGMETVKLRQRNIDFKKLDRIIYDYIPSGFDIRKKPHKYAEYIDLS
RLACKNHVNLDRARLSIGTLGGGNHFIEVNRDSHDNLYLVVHTGSRHLGKQVAEYYQKLA
YEELRRKDVNVGKHLAYVHGESFRNYLNDMKIVQQYAVYNRKAIIDEILTRMGLEEEDRF
TTIHNYIDLDGMILRKGAISAKKGERVLIPLNMRDGSLICTGKGNREWNYSAPHGAGRIM
SRRKAKETISLEDFKKTMEGIYTTTVNYDTLDECALAYKPMDEIIDNIRDTVEIVDIIRP
LYNFKTAE
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgattctggtaaaaggaaaatacaataccgccaaaatatttacatgcaatgtggaaagc
ggagcattggatcaaattaaggaattgtgtgatcaggaatttgtaaaggacagcataata
agaattatgcctgatgtgcatgagggcattggctgtaccattggtaccacgatgacaatt
accgataaaattgtgcccaatctggtgggtgtggacataggctgtggaatggaaacggta
aaacttaggcaaagaaacatcgattttaaaaagcttgacagaataatttatgattatata
ccttccggtttcgatatcaggaaaaaacctcataaatacgctgaatatattgatctgagc
agacttgcctgcaaaaatcatgtcaatcttgacagggcaagactgagtataggaacgctt
ggcggcggaaaccattttatagaagtcaacagggacagccatgacaatctgtacctggtt
gtccatacaggcagcaggcatcttggaaaacaggtggcggaatattatcagaaactggcg
tatgaggagcttagaaggaaagacgttaatgtaggcaagcacctggcttatgtccatggg
gagagtttccggaattacctcaatgacatgaaaatagttcagcaatatgccgtgtataac
cgcaaagccattattgatgagattttgacaagaatgggtctggaggaggaagacaggttt
actacaatccacaactatattgatctggatggcatgattctaagaaagggcgccatatcc
gccaaaaaaggcgaaagagtgttaataccccttaatatgagggacggaagcctgatctgc
acaggaaagggcaacagggaatggaattattcggcaccccatggcgcgggacggattatg
agcagaagaaaggcaaaggaaaccataagccttgaggattttaaaaaaaccatggagggc
atatataccaccaccgtcaattatgacactctggacgagtgcgctctggcgtataagcca
atggatgaaattattgacaatatccgggatacggttgaaatagtcgacatcatacgcccg
ctttataattttaaaaccgcggaataa
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