Thermoclostridium stercorarium subsp. stercorarium DSM 8532: Clst_2250
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Entry
Clst_2250 CDS
T02527
Name
(GenBank) exonuclease-5 beta subunit
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
csd
Thermoclostridium stercorarium subsp. stercorarium DSM 8532
Brite
KEGG Orthology (KO) [BR:
csd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csd03400
]
Clst_2250
Enzymes [BR:
csd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Clst_2250
DNA repair and recombination proteins [BR:
csd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Clst_2250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
Viral_helicase1
DEAD
ResIII
AAA_30
CdiA_helical
Motif
Other DBs
NCBI-ProteinID:
AGI40274
UniProt:
L7VSG3
LinkDB
All DBs
Position
complement(2540140..2543421)
Genome browser
AA seq
1093 aa
AA seq
DB search
MNEKVIPDIDERNQIVNELDKNMLVEAGAGSGKTTSIVNRMVSLVISGKCKVENMAAITF
TRKAAQELKERFQNELERRYREEENTAIKSALKEALENMEKSFIGTIHSFCASLLRERPV
EGGVDPDFEEMDELTDKLMHKQAWQQYLLDIRKDFPEKLAELNDIGIKPADMEEIFNLLT
EYPDVEVVRSRIQKPDLMPVVKELKKLLYRARHYIPKTEPEKGYDSLQSKIMDSVRMLSY
FDMDTDINRVSILERFENEQRVILNRWLCDSATTKQIQGEFNTIAQTQIKPALQKWREYC
HDVVMSFLLPAVEYYENLKARRSGLNFQDLLLKTVNMLKNHPEVRLYFQNKYRCLLIDEF
QDTDPIQAELMFMITGQDINEKQWHKLVPHPGSLFVVGDPKQSIYRFRRADIDIYNRVKQ
IFLQTGGSVVKLTTSFRSMDTLGIWFNRVFENLLSGGETACQAEFSPLNAVNENAAGCDS
GVRVIKIPGEFEKKQEIIETDAEYIARIIRNAVDNGGIKLYRTPQEKAKGLSEKPEYRDF
LIILRYKDGMEVYAKTLKKYGIPVQMSGGSLLSDVEELKEFIILLKFLRDPENQVLLVAV
LKGIFFGISDKALAEYRLCGGVFRPYAEIPADLPEEIASLFRTAYEKLLMYLNWTRNNPP
VTAFEKIAQDIGLIPLVLVGTEGQTGCGYIIKILEILRRNAVSGFSDFNSMVDRLDAIVN
ANLDEELDITGEERNAVRIMNLHKAKGLEAPVVFLANPYKKPNIAPDYHIQRAENKSVGY
FVIKKKTGEFQPKRILAQPLNWAEYEAAETRYLNAEETRLLYVAATRAKNLLFISCCEKN
NNKNPWEPLLDFTDTSKDVYEIPEIPVPKPDYPKSSVYIKRKELEEYTKHVKELINTAER
PTYMELAVTDVISEDPLPAVKGGLGPEWGSAMHEIIERLVRDEAYYGNCMDLILKRYGFT
EPEHGKQAEKLIKEFKESELYSRILNAELKLTEIPFAIRLESGDAVYEKLGINDSLPVIL
HGKIDLVVKEKDGWAVIDYKTNHYETEEQLNLLIRHYSKQIEIYCSVLEKILNEKAVSGE
LYFTGHGLVKVVP
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaaaggtaatcccggatattgacgaaagaaatcagatagtaaatgaacttgat
aaaaatatgcttgtggaagcgggagccggatctggaaagactacaagcattgtaaaccgt
atggtaagccttgtaatttcgggaaaatgcaaagtggaaaacatggccgcgataacattt
accagaaaagcggcgcaggagctgaaagagcgctttcagaacgaactggaaagacggtac
cgtgaggaggaaaatacagcgattaaaagcgctcttaaagaagcgctggagaatatggaa
aagagttttatagggacaatacattccttctgtgcttcattgctgagggaaagacctgtc
gaaggcggtgttgatcccgattttgaggaaatggacgaattgaccgataaacttatgcat
aaacaggcatggcagcagtatttgcttgatatcaggaaggattttcccgaaaagctggca
gaactcaatgatatcggaattaagcctgcggacatggaagagattttcaatcttctgacc
gaatatcccgatgtggaggttgtgcgaagccgtattcaaaagcccgacttaatgcctgtt
gttaaagaacttaaaaaacttctgtacagggcaaggcattacatcccgaaaaccgaacct
gaaaaggggtatgacagtcttcagtcaaaaatcatggattcggtccgaatgctcagttat
tttgacatggatactgacattaacagggtcagtatacttgaaaggtttgaaaacgagcag
agagtgattctgaacaggtggctttgtgacagcgcaacaacaaagcagattcagggagag
tttaataccattgctcaaacacaaataaaacctgctttgcaaaaatggcgggaatattgt
catgatgtagtgatgagctttctgcttcctgcggtggagtattacgaaaatcttaaagcc
aggcggtcggggcttaacttccaggacttgcttttaaaaacagttaacatgcttaaaaac
catcccgaagtcaggctgtacttccagaataaataccgttgccttctgatagacgaattc
caggataccgatcccattcaggccgagctgatgtttatgattacagggcaggacataaat
gaaaagcagtggcataaacttgttccccaccccggttccctttttgttgtcggggatccg
aaacagtccatatacagattcagaagggcggatatcgatatatacaaccgcgtgaaacag
atatttttgcaaaccggcggaagtgtggtgaaactgacaaccagtttccgctcaatggat
actttggggatatggtttaaccgggtttttgagaatctgctgtcgggcggggagactgcc
tgccaggccgaattttctcctctgaatgccgttaatgagaatgccgccgggtgtgactcg
ggtgtaagggttataaaaatacccggagaatttgaaaaaaagcaggagataattgaaacc
gacgcagagtatattgcgcggattatccgaaacgccgttgacaatggaggaataaaactc
tacagaaccccgcaggagaaggcaaaaggtctttctgaaaaaccggaatacagggatttt
ctaatcattctgcgttacaaggacggaatggaagtttatgcaaaaacgctgaaaaagtac
ggtatcccggtacagatgtcgggcggcagtctgctttccgatgtggaggaattaaaggag
tttattatacttcttaagtttttgcgggatcccgaaaaccaggtcctgcttgttgccgtg
cttaaagggatattttttggcatcagcgacaaagctctggcggaatacagactctgtgga
ggcgttttcaggccttatgccgaaattccggcagatttgcccgaagagatcgcatccttg
ttcaggactgcatatgagaaacttttgatgtaccttaactggacgagaaataatccgccg
gtaaccgcttttgaaaaaattgcgcaggatatagggttaatcccgctggttcttgtcggg
acagaaggtcagacaggctgcgggtatataataaaaattctggaaatactgagacgcaat
gccgtttcaggtttcagcgatttcaattcaatggttgatcggctcgacgcaatagtaaat
gcgaatttggacgaagagcttgatataaccggtgaagagcgcaatgcggtaaggattatg
aatctccacaaggcaaagggccttgaagcccctgtggtttttctcgccaatccttacaaa
aaaccgaacattgctcccgattaccatattcaaagagccgaaaacaaatcggtcggctat
ttcgttataaaaaagaaaacaggcgaatttcagcctaaaaggattttggctcagcctttg
aactgggcggaatatgaggccgctgagacccgatacctgaatgccgaggaaacccgtctt
ttgtatgttgccgcaacaagagccaaaaatctgctttttatttcctgctgtgaaaaaaac
aacaacaaaaacccatgggaaccgttgcttgactttaccgataccagcaaggacgtttat
gaaatacctgaaatacctgttcctaagcctgattaccccaaatcatcagtatatataaaa
aggaaggaacttgaagaatatacgaaacatgtgaaggaactgattaacaccgctgaaaga
ccgacatacatggagctggctgtgaccgacgtaataagcgaagatccgcttcctgccgta
aagggcggccttggccctgagtggggaagcgccatgcacgaaattattgaaaggctggta
agggatgaagcatattacggcaactgcatggatttaatacttaagcggtatggatttacg
gaaccggagcatggcaaacaggccgagaaactgataaaggaatttaaagaaagcgaactt
tattcacgaatactgaacgctgagctgaaattaaccgaaattccttttgcgatccggctg
gaaagtggcgacgcagtatatgaaaaactgggcataaatgattcactgcctgtaattctg
catggtaaaattgaccttgtcgtcaaggagaaagacgggtgggccgtaattgattataaa
actaaccattatgaaacagaagaacaattaaatttactcattaggcattattcaaaacaa
attgaaatttactgctccgttctggaaaagatcctgaatgagaaggctgtaagcggtgaa
ctgtattttaccggccatggtcttgtaaaagttgtgccttaa
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