Thermoclostridium stercorarium subsp. stercorarium DSM 8532: Clst_2392
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Entry
Clst_2392 CDS
T02527
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csd
Thermoclostridium stercorarium subsp. stercorarium DSM 8532
Pathway
csd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Clst_2392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csd03400
]
Clst_2392
Enzymes [BR:
csd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Clst_2392
DNA repair and recombination proteins [BR:
csd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Clst_2392
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
BRCT
Motif
Other DBs
NCBI-ProteinID:
AGI40413
UniProt:
L7VMK4
LinkDB
All DBs
Position
complement(2693393..2696887)
Genome browser
AA seq
1164 aa
AA seq
DB search
MNSIRFDNWEKFRNIISDISNGYSISLNGLTETQRHHFIYSVIAKAGRKALYIAANDLQA
RNALESFSGMAAGKVLYFPFREKMLYDVEAKSYDQAYQRIEILDCLLRQDFDIAVLSCES
LIDIFMPPEEFAACRLSFKTGDTVDLEKLISDLARLGYERENEVEGSGQFAVRGGIIDIF
PIQMREPVRIELFDIEIDSIRVFDPESQRSVQGIDRVEILPAKEFILSKEQALKAAGRIR
RELREVVSRTDDKDLVNSLNKNFENYIEKLENAEYFAGIDKFIPYFYDENHSLLDYVGRD
SLLFVEDVARLRQRLKNVVEEYHNQCEVLLDKGMLLPGSFLMYSDPEDLPGRFARFQTVY
LNSLDEGETLTEVKKQYSLYGNNTVSYAGRIDELKKDIKAWLEKGYQITIQAMSDQRKEG
LKNFLEENGIRVYSEYPKDDTPCVVIKTGQLKNGFVYPEIKWAVLCESDIVAGKKKRAAH
QHKTGKKIDVFTDLTVGDYVVHQVHGIGVYKGIESLTVEGVKSEYLKIEYRDGGFLYIPI
TQLDLIQKYIGTEGKAPKINKLGGAEWTRQKKKVKEALKELAEELIRLEAERASMEGYAF
SPDTVWQKQFEEAFEWEETEDQLRCTEEIKSDMESKKPMDRLLCGDVGYGKTEVALRAVF
KAAMDGKQSAFLVPTTVLAAQHYENFKKRFAQFPITVEMLSRFRTESEQKRIIRDLKAGK
IDVIIGTHKLFNKEVRFKDLGLLVIDEEHRFGVEQKEKIKRMYPRVDILTLSATPIPRTL
HMSLTGIRDISIIEQPPEHRYPVQTYVLEYNEDVIADAIRREIARDGQVFYLYNRVKGIQ
AKAVSLQEMLGGQVRVGYAHGQMNERQLEKIITSFINREFDVLVCTTIIESGIDMPNVNT
IIVEDADRLGLAQLYQLRGRVGRSNRLAYAYLTYKRDKVLNETAEKRLKAIREFTEFGSG
FKIAMRDLQIRGAGNLLGPEQHGHMEAVGYDTYVRLLEETIKELKGEAVPQEDIEVNVDL
KISAYLDSQYIPDEQARLDMYKTISAVENEEEAIDVYDELLDRFGDVPEEASNLIKIVLI
RKLAAKCGFNVIKQKDDTVLMYFKEQNALPLPLLSRLVHEEKGRIMFSAGKNPYLSYKVK
GLSPSEMLDNIKILLQRVQKLQSG
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtatcaggtttgataactgggaaaagtttcggaacataatctccgatatttcc
aacggttacagtatttcactcaacggcctgaccgagacccaacggcatcactttatttat
tcggttatagcgaaggccggcagaaaggctttgtatattgccgccaatgatttgcaggcg
cgtaatgccctggagagtttcagcggtatggcggcgggcaaagtgctgtatttcccgttc
agggaaaaaatgctgtatgatgtggaagccaaaagctatgatcaggcgtaccagagaatt
gaaattctcgattgccttctgaggcaggactttgatattgctgtgctttcctgtgagtcg
ctcatcgacatttttatgccccctgaagagtttgcggcttgcagattgtcctttaaaacc
ggtgatacggtggatttggaaaaacttatttccgatcttgcgaggctggggtatgaacgg
gaaaacgaagtggaaggttcaggacagttcgcggtcagaggcggtataattgacatattt
ccgatacagatgcgggaaccggtaagaattgagctttttgatattgaaattgattccata
cgtgttttcgatccagaaagtcagagatcggttcagggcattgacagggttgaaatactt
cccgctaaggagttcattttatcgaaagaacaggctttgaaagcagccggcagaatacgg
cgtgaacttcgagaggtggtctcccggactgatgacaaggatcttgttaattctcttaat
aagaattttgaaaactatatagaaaagctggaaaatgccgaatatttcgccggtattgac
aagttcattccttatttttacgacgaaaatcatagcctgcttgattatgtcggcagggat
tcattattgttcgttgaagatgtggccaggttgaggcagagattaaagaatgtggttgaa
gaatatcacaaccagtgtgaggttcttttggacaaaggcatgcttttgcccggttccttt
ttaatgtattccgatcccgaagatttgcccgggcggtttgcccggtttcaaaccgtttac
ctgaacagcttggatgaaggtgaaacccttacagaagtcaaaaagcaatattcgctttac
ggaaacaataccgtgtcctatgcaggccgtatagatgaacttaaaaaggacataaaggca
tggcttgaaaagggataccagataacgatacaggccatgtcggaccagagaaaggaaggt
ctgaaaaatttccttgaagaaaacggcatcagggtctattcggaatatccaaaggacgac
acgccatgcgtcgttataaaaaccgggcagcttaaaaacggttttgtgtatcctgaaata
aaatgggctgtgctgtgtgaaagcgacattgttgcgggcaagaaaaaaagggctgctcat
cagcacaaaaccgggaaaaaaatagacgtgttcaccgatcttacggtgggggattatgtt
gtacatcaggttcacggaataggagtttacaagggaatagaaagccttaccgttgaaggg
gttaaaagcgaatatctgaaaattgaataccgtgacgggggatttctgtacattcccata
acccagctggatctgattcagaaatacatcggtaccgaaggaaaagcgcctaaaataaat
aaactgggcggggccgaatggacaaggcaaaagaaaaaagtcaaggaagcgctgaaagag
cttgcggaggaactgatacgcctggaggccgagcgggcgtcaatggaagggtatgccttt
tcgcccgataccgtctggcagaaacagtttgaagaggcttttgagtgggaagaaaccgaa
gatcagctgagatgcaccgaagaaataaagtctgatatggaatccaaaaagccgatggat
cgcctgctttgcggggatgtgggttatggaaagaccgaagtggcgctgcgggccgtcttt
aaagcggcaatggacggaaaacagtcggcatttctggttcctacaacggttttggctgcc
cagcattatgagaatttcaaaaaacggtttgcccagttcccgataacggtggaaatgctg
agtcgtttccggaccgaaagcgagcagaaaaggattatcagggacttaaaagccggaaaa
atagacgttataataggcacccataaactgttcaacaaagaggtgcgctttaaggacctg
ggacttttggtgattgacgaggaacacagatttggcgttgaacagaaagagaaaataaaa
aggatgtatccgagggtggatatccttaccctgtccgctacaccaataccaagaacattg
catatgtcgcttaccggaataagggatataagcataatagaacagccgccggagcaccgt
tatcctgttcagacctatgttcttgaatataacgaagatgtgatcgcagacgccataaga
agggaaatcgcaagagacggacaggtattttatctttataacagggtgaagggcattcag
gcaaaggctgtgagcctgcaggagatgctcggcgggcaggtacgcgtggggtatgcccac
gggcagatgaatgaaagacaactggaaaaaataataacttcttttataaaccgggagttt
gacgtattggtctgcactactatcattgaatcgggaatagatatgccgaatgttaataca
ataatagtggaagatgccgacaggcttggccttgcccaactttatcagctcaggggcagg
gtggggcgttcaaaccgtctggcctacgcatatttgacgtacaaaagggacaaagtgctg
aacgaaaccgcggaaaaaaggctcaaagccatccgcgaattcaccgagttcggatcggga
tttaaaatagccatgcgggatttgcagataaggggtgccggaaaccttctggggcccgag
cagcacgggcatatggaagcagtgggctatgacacttatgtaaggcttctggaagagaca
ataaaggaactgaagggcgaagcagttcctcaagaggatattgaggtaaacgtcgacctt
aagattagcgcatatctggattcgcagtatatacccgacgagcaggcaaggctggatatg
tataaaaccatatctgcagtggaaaacgaagaagaggccatagatgtctatgacgaactc
cttgacaggttcggcgatgttcccgaagaggcctcaaaccttattaagattgttttgata
agaaaactcgctgcaaaatgcggttttaacgttatcaagcaaaaggacgatacggtactg
atgtattttaaggagcaaaacgcgcttccgctgcctcttttgtcaaggcttgtgcatgaa
gaaaaaggaaggattatgttctcggcgggaaagaacccctatctttcgtacaaagtgaag
ggactgagcccttcggagatgctcgacaatattaagattctgttacagagggttcaaaaa
ttgcagtcagggtaa
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