Thermoclostridium stercorarium subsp. stercorarium DSM 8532: Clst_2478
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Entry
Clst_2478 CDS
T02527
Symbol
recD
Name
(GenBank) RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
csd
Thermoclostridium stercorarium subsp. stercorarium DSM 8532
Pathway
csd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Clst_2478 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csd03400
]
Clst_2478 (recD)
Enzymes [BR:
csd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Clst_2478 (recD)
DNA repair and recombination proteins [BR:
csd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Clst_2478 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
PIF1
AAA_22
HHH_5
UvrD_C
Helicase_RecD
ATPase_2
UvrD-helicase
AAA_16
HHH_2
nSTAND3
PhoH
NPHP3_N
T2SSE
DEAD
SLFN-g3_helicase
AAA_28
TsaE
AAA
Hjc
NTPase_1
MobB
MeaB
AAA_29
DUF815
NACHT
ABC_tran
ATP_bind_1
cobW
Motif
Other DBs
NCBI-ProteinID:
AGI40493
UniProt:
L7VMU1
LinkDB
All DBs
Position
complement(2780628..2782841)
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AA seq
737 aa
AA seq
DB search
MERIEGIVEDIIFCNRDNWYTVCDIRSGRRLITVVGYMPDIAIGETVVVSGTWTVHQDYG
KQLKVETCERVLPTTTDAIYKYLASGIIKGIGETTAKKIVDRFGEDTLRILQFEPQRLSE
IKGISEEKALQIGQAFIEREQMRQIVMFLQKYGISATYAVKVWKKFGNEAVNEIKRNPYR
LTDEDINIGFKIADRVAISMGIDIESEFRIASGIQYALSKAVQDGHVYLPSDVLIPYASR
LLDVSAEAVERVLSGLIFEESVCIEKTPEEDRVYLSPFFKAEQCVARKLAVLSSIGPKKN
ILNLEKLLEEVQEEQRIEYTAEQLEAIRCSATESILVVTGGPGTGKTTLIRGIISIFEKS
GLEIVLAAPTGRAAKRMTEATGKEAKTIHRLLEMEFSVDESYREFRKNERDPIKADAIII
DEMSMVDILLMHSLLKAVEPGTRLILVGDVDQLPSVGPGKVLGDIIESECLKVIRLNTVF
RQAGESSIVINAHRINKGIFPEFSMSEGDFFFIPRSTPKATAQAVLELCTARIPEKFGLD
PMKDIQVLSPSKKGDAGIYNLNALLQQCLNPPESGVREKNFRGVVFRENDRVMQIKNNYN
LPWTMEDKNRKVVSGEGVFNGDMGIIREIDPENDYLTVLFDDGKIVEYSFDMLDELEHSY
AITVHKSQGSEFPAVVVALSGVPPMLRLRNLLYTAITRARQLVVIVGDIEILRQMVNNAT
ERERYTGLKERLIRYFE
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
ttggagagaatagaaggaattgtggaagatattatattttgcaatagggacaactggtat
accgtatgtgatatacgctcggggagaaggcttataaccgtggtgggttatatgcccgac
attgccattggcgaaacggttgttgtaagcgggacgtggacggtacatcaggactatggg
aaacagctgaaggttgagacctgtgaaagagtgcttccgacgacgaccgatgccatatat
aagtacctcgcgtcgggtataattaagggaattggcgaaacaacggcgaaaaaaattgtt
gacaggttcggcgaggacacgttaaggattttgcagttcgaaccgcagcgcctgtccgag
ataaagggaatcagtgaagagaaggctttacagattggacaggcttttattgaaagggaa
cagatgcggcaaatcgtgatgttccttcagaaatacggaatttcagccacttatgccgta
aaagtatggaaaaagttcggaaatgaagccgttaatgaaataaaacgcaatccataccga
ctgaccgatgaggatataaatatcggatttaaaattgcggaccgtgttgcaatatcgatg
ggaattgatatcgaatccgaattcagaattgccagcggaatccagtacgcgttgtcgaaa
gcggtgcaggacgggcatgtgtatctgccgtccgatgtactgataccatatgcctcaagg
cttctggatgtgtcagccgaagcggtggaaagagtcctgtcaggccttatctttgaagaa
agcgtctgtattgaaaaaacgcccgaggaagacagggtatatctgtccccatttttcaaa
gccgagcagtgcgtggcaaggaaacttgcagttttaagcagcatagggccgaaaaagaat
atattgaatctggaaaagctgcttgaggaagtccaggaagaacagcgtattgaatacacc
gcagaacagcttgaggcaatacgctgttcggccacggaaagcatactggttgttaccggc
ggccccggaacgggtaaaaccacgcttataaggggtattatatcgatatttgaaaaaagc
ggcctggaaattgttttagcggcacctaccgggagggcggcaaaaaggatgaccgaggcc
acgggcaaagaggcaaaaaccattcaccgccttcttgagatggagttctcagtggatgaa
agctacagggaattcaggaagaatgagcgggatccgataaaggccgatgccataattata
gacgaaatgtcaatggttgacattctgcttatgcattcgttgcttaaggcggttgaaccc
ggtacaaggcttattctggtcggagacgtggaccagcttccgtcggtgggaccgggaaag
gtactgggcgacataattgaaagcgaatgccttaaagtcatacggttaaacacggttttc
aggcaggccggtgaaagttccatcgtcattaacgcccacaggataaacaaaggtatcttt
ccggaatttagtatgtccgaaggagattttttctttatcccgagaagcacgccgaaagca
acggcacaggccgtactggagctatgcacggctcggattcctgagaaattcggcctggac
ccgatgaaagacatccaggtgctgtcgccgtcgaaaaaaggtgatgcggggatttacaac
ctgaacgctctgttgcagcagtgcctgaacccgccggaatcaggagtgagggaaaaaaac
ttcaggggcgtggttttcagggaaaatgacagggtaatgcagataaagaataactacaat
ttgccatggacgatggaggacaaaaaccgaaaggttgtaagcggtgaaggcgtattcaac
ggagatatgggcataatccgggaaattgacccggaaaatgattatttgactgtcctgttt
gatgacgggaaaattgtggaatacagtttcgacatgctggatgaactggagcattcatat
gcgattaccgttcacaaaagccagggaagtgagttccccgcggtggttgtagcgctgtcg
ggcgtcccgccgatgctgcggttaagaaaccttttatacaccgcaataaccagagcgcgg
cagcttgtagtaatcgtaggcgatattgaaatactgaggcagatggttaataacgctacc
gaaagggagaggtatacagggctgaaagaaaggctgatacggtattttgaatga
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