Caulobacter segnis: Cseg_0879
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Entry
Cseg_0879 CDS
T01221
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cse
Caulobacter segnis
Pathway
cse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cseg_0879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cse03019
]
Cseg_0879
Enzymes [BR:
cse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cseg_0879
Messenger RNA biogenesis [BR:
cse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cseg_0879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_22
NAT10_TcmA_helicase
HEM4
Motif
Other DBs
NCBI-ProteinID:
ADG09385
UniProt:
D5VEW7
LinkDB
All DBs
Position
complement(949843..951270)
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AA seq
475 aa
AA seq
DB search
MTQFADLGLAKPLLKALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPI
LQRLAEDRKPAPRRGFRCLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQMK
ALAGGIDVLVATPGRLMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIASQLTKN
RQNLFFSATMPSEIGKLAGELLKDPVQVSVAPQATTVERIDQRVLFIEAQRKRPLLAELF
ADSSFSRTIVFTRTKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMRALV
ATDIAARGIDVNDVSHVINYELPNVPEAYVHRIGRTARKGKDGIAISFCADDERNLLKDI
QKATRQTIPAFDRRNDKQLAAAAAVADKLVPAEKYVDPRRADPRNDVPSELRRKRNRNGG
ARNGGGGQKGPQAQGQGRGQGQGKPQGQKAAGGGNGFRGPKRPAAPAEKRWSPID
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgactcaatttgctgaccttggcctggccaagccgctgctgaaggccctcgccgagaag
ggttacaaggagccgacgccgatccaggcccaggccatcccggtggtgctgcaaggcaag
gacctgctgggcatcgctcagaccggcaccggcaagaccgccgccttcgccctgcccatc
ctccagcgcctggccgaggaccgtaagccggccccgcgccgcggcttccgctgcctggtg
ctctcgccgacgcgcgaactcgcgacccagatcgccgagaacttcaaggcctacgccgtc
cacatgggcctgtcggtccacaccatctatggcggcgtgaagtacggcccgcagatgaag
gccctggccggcggcatcgacgtcctggtcgccacccccggccgcctgatggaccacatg
gccgaaaagtcggccatcgtctcgggcaccgagatcttcgtgctcgacgaagccgaccag
atgctggacctcggcttcgtggtgccgatccgcaagatcgccagccagctgaccaagaac
cgccagaacctgttcttctcggccaccatgcccagcgaaatcggcaagctggccggcgag
ctgctgaaggacccggtccaggtctcggtcgcgccgcaggccacgacggtcgagcgtatc
gaccagcgcgtcctgttcatcgaggcccagcgcaagcgtccgctgctggccgagctgttc
gccgatagcagcttctcgcgcaccatcgtcttcacgcgcaccaagcgcggcgccgaccgg
gtggccaagtatctgaacgccgccggtatcgaggccgcctcgatccacggcgacaagacc
caaggccagcgcgagcgcgccctggcggccttcaaggccggcgagatgcgggccctggtg
gcgaccgacatcgccgcgcgcggcatcgacgtcaacgacgtcagccacgtgatcaactac
gagctgcccaacgtgccggaggcctatgtccaccggatcggccgcaccgcgcgcaagggc
aaggacggcatcgccatcagcttctgcgccgatgacgagcgtaacctgctgaaggacatc
cagaaggccacccgccagacgatcccggccttcgaccgtcgcaacgacaagcagctggcg
gcggccgcggccgtggccgacaagctggttccggcggaaaagtacgtggacccgcgccgc
gccgacccgcgcaacgacgtgccgtccgagctgcgccgcaagcgcaaccgcaacggcggc
gctcgcaatggcggcggcggccagaagggccctcaggcccagggtcaaggtcgcggccaa
ggccagggcaagccgcagggccagaaggccgccggcggcggaaacggcttccgcggtccc
aagcgtccggcggctcccgccgagaagcgctggtcgccgatcgactaa
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