Caulobacter segnis: Cseg_2167
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Entry
Cseg_2167 CDS
T01221
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cse
Caulobacter segnis
Pathway
cse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cseg_2167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cse03019
]
Cseg_2167
03009 Ribosome biogenesis [BR:
cse03009
]
Cseg_2167
Enzymes [BR:
cse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Cseg_2167
Messenger RNA biogenesis [BR:
cse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cseg_2167
Ribosome biogenesis [BR:
cse03009
]
Prokaryotic type
rRNA processing factors
Cseg_2167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TGT
Motif
Other DBs
NCBI-ProteinID:
ADG10631
UniProt:
D5VJV2
LinkDB
All DBs
Position
2372970..2375693
Genome browser
AA seq
907 aa
AA seq
DB search
MSKKMLIDAAHAEETRVVVVDGTRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFNEIHPDYYQIPVADREALMRDDSGDDEDDTPISRRATGGDDEDDVNGED
TAIDDDEDDVEEELARRKRRLMRKYKIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLA
GRYGVLMPNTARGGGISRKITAVTDRKRLKSVVQSLDVPQGMGLIVRTAGAKRTKAEIKR
DYEYLLRLWENIRENTLHSIAPALIYEEEDLVKRAIRDMYDKDLDGIWVEGDAGYKEARD
FMRMLMPSQAKKVFNYRDPTPLFVKNKIEDHLAQIYSPVVPLRSGGYLVINQTEALVAID
VNSGKATRERNIEATALKTNCEAAEEAARQLRLRDLAGLIVIDFIDMDEAKNNRTVEKVL
KDALKDDRARIQMGKISGFGLMEISRQRRRTGVLEGTTHVCEHCEGTGRVRSVESSALAA
LRAVEVEALKGSGSVILKVSRSVGLYILNEKRAYLQRLLETHGLFVTVVVDDSLHAADQE
IERTELGERIAVAPAPYVDEDDDFDYAAFDDEAEEDDEEVLEDEDDIEREDTDDDDASAR
KQAREDDRGDRKGRRRRDRRRGRRDERETETEIEADSEGDEEDADADDRAEFGDEDEDAR
RRRRRRGRRGGRRGGREDGDRPTDAFVWIRPRVPFGENVFTWHDPAALVGGNGGNGGEGR
RPAPEARAEAPAERPERAEREERPARERGRRGRDRGRRNRDEAPVADAAVAEAAAPAEMI
AAAEPAEPFEAPILAPPVISAPPADVWVELPEVEEAPKKPKRVRSRGKKPAADVAETADA
VAEAVTESVAIVPPEPEPEAAPVVEAAPEPAPEPEIAVEAAPAAPAEPDPAEITTPPEKP
RRGWWRR
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaagatgctgatcgacgcagcacacgccgaagagacgcgtgtggtcgtcgtg
gacggaacccgggttgaagagttcgatttcgagagccagacccgcaaacagcttcgtgga
aatatctatctcgccaaggtgacccgcgtcgaacccagccttcaggccgcgttcgtcgaa
tatggtggtaatcgccacgggttcctggcgttcaacgaaatccaccccgactactaccag
atcccggtcgccgaccgtgaagcgctgatgcgcgacgattccggcgatgacgaggacgac
accccgatctcgcgtcgcgccacgggcggcgacgacgaggacgacgtcaacggcgaagac
accgcgatcgacgacgatgaagacgacgtcgaagaagagctggcgcgccgcaagcgccgg
ctgatgcgcaagtacaagatccaggaagtgatccgccgccggcagatcatgctggtccag
gtcgtcaaggaagagcgcggcaacaagggcgcggccctgaccacctacctctccctggcc
ggccgctacggcgtcctgatgcccaacaccgcccgcggcggcggtatcagccgcaagatc
acggcggtcaccgaccgcaagcgcttgaagagcgtcgtccagagcctggacgtgccgcag
ggcatgggcctgatcgtccgtacggccggcgccaagcgcaccaaggccgagatcaagcgc
gactacgaatatctgctgcgtctctgggagaacatccgcgagaacacgctgcactcgatc
gcgccggcgctgatctacgaggaggaagacctcgtcaagcgcgccatccgcgacatgtac
gacaaggacctggacggcatctgggtcgagggcgacgccggctacaaggaagcgcgcgac
ttcatgcgcatgctgatgccgagccaggccaagaaggtcttcaactaccgcgacccgacc
ccgctgttcgtgaagaacaagatcgaggaccatctggcccagatctattcgccggtcgtg
ccgctgcgctccggcggctatctggtgatcaaccagaccgaagccctggtcgcgatcgac
gtcaactcgggcaaggccacgcgcgagcgcaacatcgaggccacggccctcaagaccaat
tgcgaggccgccgaggaagccgcccgccagctgcgcctgcgcgacctggccggcctgatc
gtcatcgacttcatcgacatggatgaagccaagaacaaccgcacggtcgagaaggtcctc
aaggacgccctcaaggacgaccgcgcgcgcatccagatgggcaagatctcgggctttggc
ctgatggagatcagccgccagcgccgccgcaccggcgtgctggaaggcaccacccacgtc
tgcgaacactgcgaaggcaccggccgcgtccgttcggtcgagtccagcgccctggccgcc
ctgcgcgcggtcgaggtcgaggccctgaagggctcgggcagcgtgatcctgaaggtctcg
cgctcggtcggcctctatatcctgaacgaaaagcgcgcctacctgcagcggctgctggag
acgcacggcctgttcgtgaccgtcgtggtcgacgacagcctgcacgcggccgaccaggag
atcgagcgcaccgaacttggcgaacgcatcgccgtcgcgccggcgccctatgtcgatgaa
gacgacgacttcgactacgccgccttcgacgacgaggccgaggaagacgacgaagaagtc
ctcgaggacgaggacgacatcgagcgcgaagacaccgacgacgacgacgcctccgcccgc
aagcaggcgcgcgaagacgatcgtggcgaccgcaagggccgccgccgccgtgatcgccgt
cgcggccgtcgcgacgagcgcgaaaccgagaccgaaatcgaggctgacagcgaaggcgac
gaggaagacgccgacgccgacgaccgcgccgagttcggcgacgaggacgaggacgcccgc
cgccgtcgccgccgtcgcggccgtcgtggcggccgtcgtggcggtcgcgaagacggcgat
cgtccgaccgacgccttcgtctggatccgtccccgcgtcccgttcggcgagaacgtgttc
acctggcacgacccggcagccctggtcggcggcaacggcggtaacggcggcgaaggtcgc
cgcccggcgccggaagcgcgcgccgaggccccggccgagcgtccggaacgcgccgagcgc
gaggagcgtcccgcccgcgagcgtggccgtcgcggtcgtgaccgcggccgtcgcaatcgc
gacgaggccccggtcgccgacgcggccgtggccgaggccgccgcgcccgccgagatgatc
gccgccgccgagccggccgaaccgttcgaagcgccgatcctggctccgccggtgatctcc
gcgcctccggccgatgtctgggtcgagttgccggaagtcgaggaagcgccgaagaagccc
aagcgcgtgcgttcgcgcggcaagaagcccgccgccgacgtcgccgaaacggcggacgcc
gtggccgaagccgtcaccgaatcggtggcgatcgttccgcccgagccggaacccgaggcc
gccccggtcgtcgaagccgcgcccgagcccgcgccggaaccggagatcgccgtcgaggcg
gcgcccgccgctccggccgaaccggacccggccgagatcaccacgccgcccgaaaagccg
cgccgcggctggtggcgccggtaa
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