Entry |
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Name |
(GenBank) ribonuclease, Rne/Rng family
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KO |
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Organism |
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:cse00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cseg_2167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:cse03019]
Cseg_2167
03009 Ribosome biogenesis [BR:cse03009]
Cseg_2167
Enzymes [BR:cse01000]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Cseg_2167
Messenger RNA biogenesis [BR:cse03019]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cseg_2167
Ribosome biogenesis [BR:cse03009]
Prokaryotic type
rRNA processing factors
Cseg_2167
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
2372970..2375693
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AA seq |
907 aa
MSKKMLIDAAHAEETRVVVVDGTRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFNEIHPDYYQIPVADREALMRDDSGDDEDDTPISRRATGGDDEDDVNGED
TAIDDDEDDVEEELARRKRRLMRKYKIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLA
GRYGVLMPNTARGGGISRKITAVTDRKRLKSVVQSLDVPQGMGLIVRTAGAKRTKAEIKR
DYEYLLRLWENIRENTLHSIAPALIYEEEDLVKRAIRDMYDKDLDGIWVEGDAGYKEARD
FMRMLMPSQAKKVFNYRDPTPLFVKNKIEDHLAQIYSPVVPLRSGGYLVINQTEALVAID
VNSGKATRERNIEATALKTNCEAAEEAARQLRLRDLAGLIVIDFIDMDEAKNNRTVEKVL
KDALKDDRARIQMGKISGFGLMEISRQRRRTGVLEGTTHVCEHCEGTGRVRSVESSALAA
LRAVEVEALKGSGSVILKVSRSVGLYILNEKRAYLQRLLETHGLFVTVVVDDSLHAADQE
IERTELGERIAVAPAPYVDEDDDFDYAAFDDEAEEDDEEVLEDEDDIEREDTDDDDASAR
KQAREDDRGDRKGRRRRDRRRGRRDERETETEIEADSEGDEEDADADDRAEFGDEDEDAR
RRRRRRGRRGGRRGGREDGDRPTDAFVWIRPRVPFGENVFTWHDPAALVGGNGGNGGEGR
RPAPEARAEAPAERPERAEREERPARERGRRGRDRGRRNRDEAPVADAAVAEAAAPAEMI
AAAEPAEPFEAPILAPPVISAPPADVWVELPEVEEAPKKPKRVRSRGKKPAADVAETADA
VAEAVTESVAIVPPEPEPEAAPVVEAAPEPAPEPEIAVEAAPAAPAEPDPAEITTPPEKP
RRGWWRR |
NT seq |
2724 nt +upstreamnt +downstreamnt
atgtcgaagaagatgctgatcgacgcagcacacgccgaagagacgcgtgtggtcgtcgtg
gacggaacccgggttgaagagttcgatttcgagagccagacccgcaaacagcttcgtgga
aatatctatctcgccaaggtgacccgcgtcgaacccagccttcaggccgcgttcgtcgaa
tatggtggtaatcgccacgggttcctggcgttcaacgaaatccaccccgactactaccag
atcccggtcgccgaccgtgaagcgctgatgcgcgacgattccggcgatgacgaggacgac
accccgatctcgcgtcgcgccacgggcggcgacgacgaggacgacgtcaacggcgaagac
accgcgatcgacgacgatgaagacgacgtcgaagaagagctggcgcgccgcaagcgccgg
ctgatgcgcaagtacaagatccaggaagtgatccgccgccggcagatcatgctggtccag
gtcgtcaaggaagagcgcggcaacaagggcgcggccctgaccacctacctctccctggcc
ggccgctacggcgtcctgatgcccaacaccgcccgcggcggcggtatcagccgcaagatc
acggcggtcaccgaccgcaagcgcttgaagagcgtcgtccagagcctggacgtgccgcag
ggcatgggcctgatcgtccgtacggccggcgccaagcgcaccaaggccgagatcaagcgc
gactacgaatatctgctgcgtctctgggagaacatccgcgagaacacgctgcactcgatc
gcgccggcgctgatctacgaggaggaagacctcgtcaagcgcgccatccgcgacatgtac
gacaaggacctggacggcatctgggtcgagggcgacgccggctacaaggaagcgcgcgac
ttcatgcgcatgctgatgccgagccaggccaagaaggtcttcaactaccgcgacccgacc
ccgctgttcgtgaagaacaagatcgaggaccatctggcccagatctattcgccggtcgtg
ccgctgcgctccggcggctatctggtgatcaaccagaccgaagccctggtcgcgatcgac
gtcaactcgggcaaggccacgcgcgagcgcaacatcgaggccacggccctcaagaccaat
tgcgaggccgccgaggaagccgcccgccagctgcgcctgcgcgacctggccggcctgatc
gtcatcgacttcatcgacatggatgaagccaagaacaaccgcacggtcgagaaggtcctc
aaggacgccctcaaggacgaccgcgcgcgcatccagatgggcaagatctcgggctttggc
ctgatggagatcagccgccagcgccgccgcaccggcgtgctggaaggcaccacccacgtc
tgcgaacactgcgaaggcaccggccgcgtccgttcggtcgagtccagcgccctggccgcc
ctgcgcgcggtcgaggtcgaggccctgaagggctcgggcagcgtgatcctgaaggtctcg
cgctcggtcggcctctatatcctgaacgaaaagcgcgcctacctgcagcggctgctggag
acgcacggcctgttcgtgaccgtcgtggtcgacgacagcctgcacgcggccgaccaggag
atcgagcgcaccgaacttggcgaacgcatcgccgtcgcgccggcgccctatgtcgatgaa
gacgacgacttcgactacgccgccttcgacgacgaggccgaggaagacgacgaagaagtc
ctcgaggacgaggacgacatcgagcgcgaagacaccgacgacgacgacgcctccgcccgc
aagcaggcgcgcgaagacgatcgtggcgaccgcaagggccgccgccgccgtgatcgccgt
cgcggccgtcgcgacgagcgcgaaaccgagaccgaaatcgaggctgacagcgaaggcgac
gaggaagacgccgacgccgacgaccgcgccgagttcggcgacgaggacgaggacgcccgc
cgccgtcgccgccgtcgcggccgtcgtggcggccgtcgtggcggtcgcgaagacggcgat
cgtccgaccgacgccttcgtctggatccgtccccgcgtcccgttcggcgagaacgtgttc
acctggcacgacccggcagccctggtcggcggcaacggcggtaacggcggcgaaggtcgc
cgcccggcgccggaagcgcgcgccgaggccccggccgagcgtccggaacgcgccgagcgc
gaggagcgtcccgcccgcgagcgtggccgtcgcggtcgtgaccgcggccgtcgcaatcgc
gacgaggccccggtcgccgacgcggccgtggccgaggccgccgcgcccgccgagatgatc
gccgccgccgagccggccgaaccgttcgaagcgccgatcctggctccgccggtgatctcc
gcgcctccggccgatgtctgggtcgagttgccggaagtcgaggaagcgccgaagaagccc
aagcgcgtgcgttcgcgcggcaagaagcccgccgccgacgtcgccgaaacggcggacgcc
gtggccgaagccgtcaccgaatcggtggcgatcgttccgcccgagccggaacccgaggcc
gccccggtcgtcgaagccgcgcccgagcccgcgccggaaccggagatcgccgtcgaggcg
gcgcccgccgctccggccgaaccggacccggccgagatcaccacgccgcccgaaaagccg
cgccgcggctggtggcgccggtaa |