Cryptotermes secundus (drywood termite): 111863605
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Entry
111863605 CDS
T07421
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
csec
Cryptotermes secundus (drywood termite)
Pathway
csec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111863605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csec03019
]
111863605
03041 Spliceosome [BR:
csec03041
]
111863605
03009 Ribosome biogenesis [BR:
csec03009
]
111863605
03016 Transfer RNA biogenesis [BR:
csec03016
]
111863605
Enzymes [BR:
csec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111863605
Messenger RNA biogenesis [BR:
csec03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111863605
Spliceosome [BR:
csec03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111863605
Complex C
U4/U6.U5 tri-SnRNP related factors
111863605
Ribosome biogenesis [BR:
csec03009
]
Eukaryotic type
Pre-60S particles
Helicases
111863605
Transfer RNA biogenesis [BR:
csec03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111863605
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
Death_3
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
111863605
NCBI-ProteinID:
XP_023705843
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MCDFSDDIFNVFDESATDPAPVATVEEKLPIKEAVPQPGENVSASLDNKIGPRDSSAATK
RDYEDDDDDDEEEAGKKAKTESILDDININEILPRIKVHTVETLEACTHEVAVPPEMEYV
PLKQITGKPAKEYKFILDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYSIATSFHNKQ
RVIYTTPIKALSNQKYREFYEEFKDVGLITGDVTINPTASCLIMTTEILRNMLYRGSEVM
REVGWVVFDEIHYMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVAHLHHQP
CHVVYTDYRPVPLQHYLFPAGGEGIHLVVDENGQFKEENFNTAMAVLQNAGGAAKGDQRG
RRGGNQGGGDTNIFKIVKMIMERQFAPVIIFSFSKKECEIYAMQMAKLDFNTVEEKRLVD
EVFHNAMDILSEEDRQLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFAEGLIKALFA
TETFAMGLNMPARTVLFTSARKFDGKESRWVTSGEYIQMSGRAGRRGLDEKGIVILMIDE
KVSPVVGRNIIQGQADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNHAAIPEL
YEKVRSAQNALDQLHVSRENQVATYYHIREELKVLSKQFQSYLTKPQYIVPFLQPGRLVK
VKHEEDEYDWGIIINFKKQTENMGNKRKENPLNESPSIVVDILLHISPGSCTEQPRPCPV
GVEGDLEVVPVLNTLITHLSSLRVYYPKDLRPPDSRKSVLKTIAEVKKRFPNGIPLLNPV
TDMNIKDPVFQDIVKRIESYEERLYAHPLHKDPDLDTLYNLYSKKLEISQELKVTKQELK
KAKSLLQMDQLKSLKRVLRRLGYCTASDVIEIKGRVACELSGADELLMTEMIFNGMFNNL
TVPQCVALISCFVCDEKSNEMPKMGEELSGPLRQMQDLARRIARVSVEAKLDIVEDVYVD
QFKPFLMDVVHAWCKGASFLQLCKMTSIFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLE
NKFSEAIKVIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgatttcagtgatgatatttttaatgtgtttgatgaaagtgccacagatccagcg
cctgtagcaacagttgaagagaaactacccataaaagaagctgtacctcaaccaggagag
aatgtttctgcttcacttgataacaaaattggaccacgtgatagcagtgctgctacaaaa
cgtgattacgaggatgatgatgatgatgatgaggaagaggctggaaagaaggcaaagaca
gagtccattttggatgacataaacattaatgaaatcttgccacgaatcaaggttcataca
gtggaaacgctggaagcctgcacacatgaagttgctgtgccccctgagatggaatatgtc
cccttaaaacagataactggcaagcctgccaaggaatacaagttcattttagatccattc
cagaaagaggccatcttgtgcattgagaacaaccagtcagtacttgtatctgctcatact
tctgcagggaagacggttgttgcagagtacagtattgcaacatcatttcacaacaagcag
cgagtcatttatacaaccccgatcaaggctcttagtaaccagaagtatcgggaattctat
gaagagttcaaagatgttggactcatcactggtgatgtcacgatcaatcccacagcatcc
tgccttatcatgacaactgagattttaagaaacatgttgtaccgaggatctgaagtaatg
cgcgaggtgggctgggttgtgtttgatgagatccactacatgcgagacaaagagcgaggt
gttgtatgggaggagacacttatactgttgccagacaacgtgcattatgtgttcctgtca
gccacgatcccgaatgcacgccagttcgctgagtgggtggcgcaccttcatcaccagccg
tgtcacgttgtctacacagactatcgacctgtaccgcttcaacattaccttttcccagct
ggtggagagggcatacatctcgttgtcgatgaaaatggccaatttaaagaagagaacttc
aacacagccatggcagtgctccagaatgccggtggtgctgctaaaggtgatcagaggggt
cgacgaggaggaaatcagggaggtggcgatacaaacatcttcaaaattgtgaaaatgata
atggaacgacagtttgctcctgtcatcatcttcagttttagcaaaaaggagtgcgaaatt
tatgctatgcagatggcaaaacttgatttcaatacagtggaagagaagcggttggtagat
gaagtgttccacaatgcaatggacattttgtctgaggaggatcgtcagctgccacaagtg
gagaatgttctgcccttgcttaggagaggcattggcattcatcatggaggcttgcttcca
attttgaaggagacaattgagattttgttcgcagaaggcttgatcaaagccttgtttgca
acagagacttttgccatgggccttaatatgcctgcccgaacagttctgttcacaagcgct
cgcaaatttgatgggaaggagtcaagatgggtaacttcaggcgagtacatccagatgtca
ggtcgagcgggtcgccgtgggctagatgagaagggtattgtcatcttaatgatagatgaa
aaagtgagtcctgtagtgggtcgcaacatcatacagggccaggctgaccccatcaactct
gctttccacctgacttacaacatggtcctgaaccttctccgagttgaagaaattaaccct
gaatacatgttggaacgaagttttttccagttccaaaatcatgcggccattccagaactg
tatgagaaggtgagatctgcccagaatgcattggaccagttgcatgtttcacgagagaac
caggttgcaacatactaccatatcagagaagaactgaaagtacttagcaaacagttccag
tcttacctcaccaagccacaatacattgtgcccttcctgcagcctgggaggctggtgaag
gtaaagcatgaagaggatgaatatgactggggcatcataattaatttcaaaaagcaaacg
gaaaacatgggaaataaaaggaaagagaacccgttaaatgaatctcccagcatcgtagtg
gacattttgcttcatatatcccctggaagctgcactgaacagccacgtccatgtcctgtt
ggggtggagggtgacttggaggtggtaccagtgttaaacacactcatcacccatctcagc
tcactcagagtgtattatccgaaagatctaaggccaccagatagtcgcaagtcagtcctc
aaaactatagcagaagtgaagaaacgattcccaaatggaattccactgctgaatccggta
acagacatgaacatcaaggacccagtcttccaggacattgtgaagcgcatagagtcatat
gaggagcgactgtatgcccatcccttgcacaaggatccagacttggacacgctttataat
ctgtactcgaagaaactggagatctcacaagagttgaaagtaacgaaacaagaattaaag
aaggccaagtctttattgcagatggatcaactcaaaagtctgaagagggttctcaggaga
ctgggctactgtacagcttctgatgtcattgagatcaagggtcgagttgcttgtgagctg
agcggtgccgatgaattgctgatgacggaaatgatattcaacgggatgttcaataacctg
actgtaccccagtgtgtggcgctaatcagttgttttgtgtgtgacgaaaagagtaacgaa
atgccaaagatgggtgaggaattgtctggcccgcttcgacaaatgcaggatttggcaagg
aggatagctcgagtgagtgtggaagcaaagctggacatcgttgaggatgtctatgtagat
cagttcaaaccatttctgatggatgttgtgcatgcttggtgcaagggtgcctccttcctc
cagctgtgcaaaatgacaagcatctttgaagggagcatcatccgatgtatgcgaagactc
gaggaggttctgcggcagctctgtcaagctgcaaagaacattggcaacacggatttggag
aacaagttcagcgaggcaattaaagtcatcaagagggacattgtgttcgctgccagcttg
tatctgtga
DBGET
integrated database retrieval system
