Cryptotermes secundus (drywood termite): 111871217
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Entry
111871217 CDS
T07421
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K19719
collagen type II alpha
Organism
csec
Cryptotermes secundus (drywood termite)
Pathway
csec04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
csec00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111871217
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
csec00536
]
111871217
Glycosaminoglycan binding proteins [BR:
csec00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111871217
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
111871217
NCBI-ProteinID:
XP_023719915
LinkDB
All DBs
Position
Unknown
AA seq
1615 aa
AA seq
DB search
MSRQALLLVLLVVVLGAQARSQQNGKRKSGRRAVLAQQPSAGADADNTDIYNEYYEEYDG
YDDYENGGRTTTPPPAVTPPTPPPSPPAPPPSPPAPPPPAPPRPRIPVQPLPPVPTQPPT
LPTSAPTPAPSPVQRPDSASRVSPDTREAGGCTFEGLPRKDGETWRPDACTSCHCEQGRV
ECSQLGSCSSGTDCEGVVCTELECPSLQYIPLGQCCPVCADEEVEPEPPSHTVLPVRPIP
GQGPGPVETTNTETIGLPGPRGDQGAPGSPGRPGDAGFPGSPGTPGIPGSPGPPGLAPDV
SSYYHQLALSQATGDKGPTGPGGFPPDPFQYLQAQVGPVGPRGPPGPPGAAGPQGFQGVR
GEPGEPGPPGQPGSPGPRGLPGLPGKDGETGDDGEAGQPGSQGPPGPRGLPGMPGLPGIK
GHRGFPGLDGAKGEQGSSGEKGAQGSSGPIGPVGPMGPAGPRGERGREGPPGPPGLRGID
GIAGPPGSPGAIGKPGPPGFPGSPGIKGDQGAQGPKGSQGLQGPRGEAGRPGQPGESGPQ
GPAGKDGLPGEKGSPGAIGLAGPPGFPGARGPPGLSGSPGSPGVKGSPGIPGERGFKGES
GMKGETGAPGPRGLPGAVGAEGKRGKRGLRGPTGSAGPPGERGAPGGRGLPGPDGAPGPK
GQSGDRGPIGPQGVKGSQGDPGRPGPPGLQGLRGTQGRTGPPGKPGNPGERGIQGADGKP
GEQGPQGLQGLPGPLGAPGDKGFTGEPGKDGEPGPPGPAGPRGDAGKDGAPGIQGPPGPP
GSDGERGAPGPGGPRGFQGVPGAPGNPGTSGKDGEPGLQGPPGIPGSAGGRGERGFPGER
GPLGPPGGPGPRGEVGSQGPDGLPGPPGAKGDKGHSGPSGLVGLPGTRGQPGLPGEKGER
GAVGPTGPEGPPGRQGERGPQGQVGAQGPPGEPAERGDPGPPGPPGEAGAPGGPGERGPT
GPQGLQGFPGLQGLVGLPGMKGERGFLGMKGEQGKSGPVGSPGEPGPPGLVGLTGAKGAR
GEAGLRGEVGLMGPPGRPGEPGLAGQPGSVGPPGTPGVPGIKGSHGDTGRPGNPGPQGQP
GAPGPEGPKGDTGSEGPPGPPGQPGPQGPSGDRGLPGLPGPTGPGGARGLRGAAGDTGPP
GKPGSEGPPGPQGVAGPPGPPGPLGEQGPEGAPGKAGPPGIAGRPGDKGPVGPSGVPGPS
GTPGLPGPPGPNGPPGPSGERGLRGETGPQGVEGPQGPRGKPGAPGPEGGKGEKGEEGPK
GAKGHRGLIGLQGLPGTQGPAGEKGMTGLPGPPGKDGEPGMKGMAGRDGNPGTPGLPGPP
GQRGPAGEEGRHGQPGNPGPPGPPGPPGETLGYDAAALAALLGQGQTKGPDPLSGDEPAR
LFGADLSDSERRDLVMKAYETLKTQWERFRRPNGRRDFPAKTCRDLHVAHPELPSGDYWV
DPNEGDVRDAILVHCDMVNKATCLYPQPNRTPEITYVGEDQEIWVTEVEGGMKLTYKADS
NQVGFLQLLSKGASQNMTYHCRNSVAYFDTIKRTYRKGIKLMTWNDAEIVPRGSQRFRYD
VGEDECRFKKAEWAKTVISYTTDNAMRLPIVDVAVRDVGTDAQSFWLEIGPACYT
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacaggctttgttgctggttcttctagtcgtcgtcctgggcgctcaagctcgg
tcgcaacagaacgggaagcggaagtccggcaggagggcggtactcgcgcagcagccatcg
gcaggcgcagacgccgacaacactgacatctataatgaatattacgaagaatacgatgga
tacgacgattatgagaatggaggcaggaccactacgccgccacctgcggtcacgcctccc
acgccaccaccttcgccaccagcacctccaccttctccaccagcaccaccaccacctgcg
ccacctcgacctagaattccagtacagcccctgccgccagtgccgacgcaaccccctaca
ctgcccacatctgcaccaaccccggcacccagccctgtgcagcgtccagatagtgcatca
agggtctctcctgacaccagagaggcgggcgggtgcacattcgagggtttgccgcgcaag
gacggggaaacgtggagaccggatgcttgcacgtcgtgccactgtgaacagggccgcgtc
gaatgctcgcagctgggatcctgctcgtcaggaacagactgtgagggggtggtgtgtacg
gagctagaatgtccttccctacaatatataccactcggacagtgctgtcccgtctgtgca
gatgaagaggtggagcccgaacctccatcccatacagtactaccggttcgcccaatccca
ggacagggacctggccctgtggagaccactaacacagagaccattggactacctggccct
aggggtgatcagggtgctcctggatccccaggtcgaccaggggatgctgggtttcctgga
tcacctggaacacctggaattcccggaagtcctggaccccctggactggcacctgatgtg
tccagctactaccaccagctggccctgtcacaggctacaggagacaaaggacccacagga
cctggaggattccctccagaccccttccaatatttgcaagctcaagtggggcctgtaggg
ccccgtggacctccagggccaccaggtgctgcaggtccacaagggttccagggagtgcgg
ggtgagccaggggagccaggacctccaggacaaccaggatcaccaggccccagggggcta
ccaggtctgcctgggaaagatggagagactggtgatgatggtgaggcaggacaaccaggg
tctcagggccctcccggacctagaggactacctggcatgccaggactgccagggatcaag
ggacaccgtggctttccaggcctggatggggcaaagggcgagcaagggtcatcaggggag
aagggtgcacagggaagttcagggcccattggtcctgtcggtcccatgggcccagcaggc
ccacgaggagaaaggggaagagaaggacctcctggaccacctggactgcgtggtattgat
ggcattgcagggcccccaggatctccgggagcgatcgggaagccaggcccacctgggttc
cctgggagtccaggcatcaaaggtgaccagggtgctcagggccctaaagggagccaggga
ctgcagggaccacgaggtgaggcaggaaggccaggacagcctggagagtcaggtccacag
ggaccagctggcaaggatggacttccaggagagaagggaagccctggagcaataggtctt
gcaggacctccaggatttccaggagctagaggacctccaggcctttctgggagccctgga
tcacctggagtgaaagggagtccaggaataccaggagaacgtggcttcaagggcgagtca
ggcatgaagggggagacaggagctccagggccccgtggacttccaggtgctgtaggggca
gagggcaaaagaggaaagagagggctgcgaggacccactgggtctgcgggtccacctgga
gagcgtggagcaccagggggtagaggcctgccagggcctgatggagcacctggacctaaa
ggtcagtctggggacaggggtcctattgggcctcaaggagtgaaaggctctcagggggac
cctggcagaccaggaccaccaggactgcaggggctgcgtgggacacagggacggactgga
cctccaggtaaaccaggtaaccctggtgagagaggaattcaaggagcagatggtaaacca
ggagaacagggacctcagggacttcagggactgccagggcctttaggggccccgggagac
aagggtttcactggagagccagggaaagatggagaacctggtcccccagggccagcagga
ccccgaggtgatgcaggtaaagatggtgctcctggaatacagggccctcctgggcctcct
gggtctgatggtgagagaggggcccctggacctggaggtcctaggggattccagggggtg
ccaggagccccaggaaatccgggaacgtctggtaaagatggtgagcctggcctacagggc
ccaccaggcataccaggatcagctggaggaagaggcgagagggggttcccaggagagaga
ggcccattagggcctcctgggggaccagggccccgaggtgaagttggatcccaaggacct
gatggactgcctgggccaccaggtgcaaagggcgacaaagggcactcaggaccatcagga
ttagtgggtttgcctggtacaagaggacagccaggattacctggagagaagggtgagagg
ggtgcagtgggccccactggaccagagggacccccaggtcggcaaggggagaggggtcct
caggggcaggttggtgcgcagggtcccccaggggagccagcagaaaggggggatccaggg
ccacctggaccacctggcgaggcaggagcccctggaggtcctggagagcgaggtcctact
ggaccccaaggactgcaaggatttcctggcttacaagggttggtaggcctgcctggcatg
aaaggagagagaggattcctcggaatgaaaggtgaacaaggaaaatcaggccctgttgga
agtccaggagagccaggacctccaggactggtggggctcacgggtgccaaaggagccaga
ggagaagcaggattgcggggagaagtggggctcatgggaccaccaggtcggccaggggag
ccaggactagcaggccagccaggatcagtgggaccacctgggacacctggtgtgcctgga
attaaaggctcacatggtgatacgggtaggccagggaatccagggccacagggtcagcca
ggggcaccaggccctgaaggccctaagggcgatacaggatctgaagggcctccaggacct
cctgggcaaccaggacctcagggtccttcaggggacagaggactgccaggacttcctggc
cccaccggacccggtggggcaagaggcctccgaggagctgctggtgacacaggaccacca
ggcaagcctggaagtgaggggccaccagggcctcagggtgtagcaggacctcctggacct
ccaggacctcttggagagcaaggacctgagggtgcaccgggaaaagcagggcctccaggt
atcgccggcagaccaggagataagggaccagttggaccatcaggggtgccaggacccagt
gggacaccaggactgcctggccctccaggtccaaatggcccaccaggaccatcaggagaa
cgtgggctgaggggggagactggcccacagggggtagagggaccccagggtccaagaggt
aagcctggagctcctggacctgagggaggtaagggagagaagggtgaggaaggacctaaa
ggtgccaagggtcatcgcggtctcatcggtctgcaaggtcttccaggcactcaggggcct
gctggagagaagggaatgacagggttaccagggccaccaggaaaagatggagagccaggc
atgaagggaatggctggtcgagatggaaatcctggaactccaggtctgccaggtcctcca
ggacagcgagggccagcaggtgaggagggaagacatggtcagcctggaaatccgggacca
cctggacctccaggtcctccaggagaaacactgggatatgatgcagcagcactggcagcc
ctgttaggacaaggacagacaaagggccctgacccgctaagtggagatgagccagcacgg
ttatttggagcagatcttagtgacagtgaacgtcgtgaccttgttatgaaggcatacgag
actctaaagacccaatgggagcgtttccggcgacccaatgggagaagggacttccctgcc
aagacttgtcgtgatttacatgtggcacatcctgaattaccttctggtgactactgggtg
gaccccaatgagggggatgtacgggatgcaatcctagtgcactgtgacatggtgaacaag
gccacctgcctgtatccacaacccaaccgcacccctgagatcacgtacgtgggcgaggat
caggagatttgggttactgaggtggagggtggcatgaagctgacatacaaagcagacagc
aatcaggtgggctttctgcaactcctgtcaaagggtgcctcacaaaacatgacataccat
tgtcgcaactctgtggcctactttgatacaataaagcgcacctataggaagggaataaaa
ctgatgacatggaatgatgccgagatcgtgccacgtggcagtcagagattccggtatgac
gtcggggaggacgaatgcaggttcaagaaagctgaatgggccaagacagtgatcagctac
acgacagacaatgcaatgcgactgccaatcgtggatgttgcagtacgcgatgttggcact
gatgctcagagtttctggcttgaaattgggcctgcatgctatacatga
DBGET
integrated database retrieval system
