Cryptotermes secundus (drywood termite): 111874539
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Entry
111874539 CDS
T07421
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
csec
Cryptotermes secundus (drywood termite)
Pathway
csec03013
Nucleocytoplasmic transport
csec03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csec00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111874539
03015 mRNA surveillance pathway
111874539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csec03019
]
111874539
Enzymes [BR:
csec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111874539
5.6.2.5 RNA 5'-3' helicase
111874539
Messenger RNA biogenesis [BR:
csec03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111874539
mRNA cycle factors
Common to processing body (P body) and stress granule
111874539
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
SLFN-g3_helicase
NPHP3_N
DEAD
Helicase_RecD
AAA_16
ATPase
nSTAND3
SRP54
AAA_22
Motif
Other DBs
NCBI-GeneID:
111874539
NCBI-ProteinID:
XP_023725885
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MSVDAYGPSSQSLTFLDTEEADLIGADTQGSEFDFTDFTLPSQSQTQISQLDAVQSQTTQ
NQVNGEVEENGLDADITATTKALGELQFEEEDDEAYYNKDLPEYACKYCGIHDPSCVVMC
NVCKKWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYSCGVRNVFVLGFI
PAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIADRCFLTWLVKIPSEQEQLRARQI
SAMQINKLEELWKDNADATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYD
KKLKESQTQENIEVRWDVGLNKKTIAYFTLAKTDGDMKLMHGDELRLRYLGELHKPWSGV
GHVIKIPDNFGEEVGIELKNNSGAPTDCISHFVVDFNXKSTSFDRMQLALRKFAVDDSSV
SGYIYHRLLGHDVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGTG
KTVTSATIVYHLVKQSGGSVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAIESPVS
FLALHNQIRNMDCNTELQKLQQLKDETGELSSVDEKRYRMLKKAAEKELLEAADVICCTC
VGAGDPRLQRLKFHSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAR
AGLSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSNFFYEGSLQNGVCAEERKLTKIEF
PWPQQEKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKLTTRFLRCGVKPEQIGVITPYE
GQRAYLVQYMQYQGSLHAKLYQEIEVASVDAFQGREKDLIIMSCVRSNEHQGIGFLNDPR
RLNVALTRSKYGIIIVGNPKVLSKQPLWNHLLNFYKEQKVLVEGPLNNLKESLIQFSKPK
KLINTANPGTHFMSTSVYDAREALVPGSVYDRTGHMNGTAVPSHFFPRPNSGGVAVDLYA
RTHDPISYISPERAQAALSNLPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRAATRS
KVKNNRSNPVKNNLMPGQNSQDATQPYSPLTQGMSQSMSQPGFSLSQPGLSQPELSQDSY
MVGEYQSQMDGLLSQDSTYQGDRSAFYPGPSQGGQFSQPY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtagatgcttatggaccaagctcacaatcgctaacattcttggacacggaagaa
gcagatttgattggcgctgatactcaaggatccgagtttgatttcacagattttacccta
ccttcccaaagccaaactcagatttcacaattagatgctgtacagagtcaaactacacaa
aatcaggtgaatggtgaggttgaagagaatggcttggacgctgacataacagctacaaca
aaagcccttggagagttgcaatttgaagaggaagatgatgaagcttactacaataaggat
ttgccagaatatgcttgcaaatattgtggaatacatgatccaagttgtgttgtcatgtgt
aatgtgtgtaaaaaatggttctgcaatggtcggggaaatacgtcagggtcacacattatc
aatcatcttgtcagagccaaacacaaggaagtcactttgcataaagatggtccgcttgga
gagactgttctggaatgttattcatgtggtgtaaggaatgtgtttgttttgggttttatc
ccagctaaagcagactcggttgttgtactcctttgtcgtcaaccttgtgcagcccagagt
tctctgaaagacatgaactgggaccaagaacagtggaagcctcttattgcagatcgttgt
ttcctaacatggctggtaaagattccatcagagcaggaacaacttcgggcaaggcagata
tctgctatgcagatcaacaagttggaagaactttggaaggacaatgctgatgctaccttt
caggatttagagaaaccgggtgttgatgaagagcctcaacaagtattgctgaggtatgaa
gatggttatcagtatcagaacatctttgggccgttggtgaagttggaagctgactatgac
aagaaactaaaagagtcgcagacacaagaaaatattgaggtccgttgggatgtgggactc
aacaagaagacaattgcatacttcacactcgcaaaaactgatggagacatgaagctgatg
catggagatgaattgcgtctacgctacctgggagaactacacaagccatggtcaggagtg
ggtcatgtgatcaagatcccagataattttggtgaagaagtgggaattgaattgaaaaac
aacagtggtgcccccactgattgcatttcacactttgttgttgatttcaattagaaatct
acttcatttgatagaatgcagttggccttaaggaagttcgcagttgatgattcctcagtg
tcaggctatatttatcataggttacttggtcatgatgtagaggaagtgttgtttcgctgt
catctaccaaaacacttctcagcacctaatcttcctgacctgaaccgttcccaggtatat
gctgtaaaacacgcagttcagcgtccactttcactaatccaaggtccaccaggaacaggc
aaaacagtcacatcagccaccattgtgtatcatctggtgaagcagagcggtggttctgtc
cttgtgtgtgcaccttccaatatagctgttgaccagttgactgagaaaattcaccgaaca
gggcttaaagtggtgcgtctttgtgccaaatcacgtgaggccatcgaatctcctgtctca
ttccttgcacttcacaaccagatacgtaacatggattgtaacactgaacttcagaaatta
cagcaactgaaagatgagactggggaactctcatctgtagatgaaaagcggtaccgaatg
ctgaagaaagctgcagaaaaggagctcctggaagcagctgatgtgatatgctgcacttgt
gtgggagctggtgatccacgtctccagcggctgaagttccactcgatacttattgatgag
agtatgcagtccactgaaccagaatgtatggttccagttgtcttaggagccaaacagctg
atcctggtaggagatcattgccagctgggcccagttgtgatgtgcaagaaggcagctcgt
gctggcttatcacagtcactgtttgagagattggttgttctgggaattcgtccattccgg
ctggaagtacagtaccggatgcatccagaattgtctcgtttcccctcaaattttttctat
gagggttccctccaaaatggcgtttgtgcagaggaacgtaaactgacgaagattgagttc
ccatggccacagcaggaaaagccaatgttcttctatgtgacacaaggtcaagaagaaatt
gctggatcagggacgtcttatttaaaccgaacagaagcctctaatgtggagaaactgaca
acacgtttcctgcgttgtggtgttaaacctgaacagattggtgttattacaccttatgaa
ggccagcgagcttacttggttcaatatatgcagtaccaaggctcccttcatgcgaagttg
taccaggagattgaagtggcaagtgttgatgcattccaaggcagagagaaggatttaatt
attatgtcatgtgtccgttccaatgaacatcaagggattggcttcctcaatgatccacgg
cgtctcaatgtggcactgacccgttccaaatatggcattattattgttggaaatcccaaa
gttctgtccaagcaaccattatggaatcacttgctgaacttctacaaggaacaaaaagtt
ctagtagaaggaccactgaacaacttgaaagagtctttgatccagttctcaaagcccaag
aagcttataaatacagctaatcctggaacccacttcatgtccacatcagtgtatgatgca
cgagaggcactggtcccaggcagtgtgtatgaccgcacaggacatatgaatggcacagct
gtaccatctcacttcttccccagaccaaatagtggaggtgttgcagtggatctgtatgcc
cggactcatgatccgatcagttacatctcaccagagagagcacaggctgcactgtccaat
cttcctgttcctgttgggatgtttatgaatatggcacacgtcccaccccgcttttataat
caacatcagcaggcattgcaagcacgtcagaaccagcgaaatcgtgctgcaactcgcagt
aaggtcaagaataatcgcagtaatccagttaagaataacttgatgcctggacaaaacagt
caagatgccactcaaccatacagtccactcacacagggaatgtctcagagcatgtctcag
cctggattcagtttatctcagcctggtctttcccagcctgaactgtctcaggacagctat
atggtgggcgagtatcagtcacagatggatggactcctctctcaagattctacgtatcag
ggagatcgctcggctttctacccgggcccatcacagggagggcagttctctcagccatac
tga
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