Citrobacter sedlakii: JY391_03005
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Entry
JY391_03005 CDS
T07832
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
csed
Citrobacter sedlakii
Pathway
csed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JY391_03005 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csed03019
]
JY391_03005 (deaD)
03009 Ribosome biogenesis [BR:
csed03009
]
JY391_03005 (deaD)
Enzymes [BR:
csed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JY391_03005 (deaD)
Messenger RNA biogenesis [BR:
csed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JY391_03005 (deaD)
Ribosome biogenesis [BR:
csed03009
]
Prokaryotic type
rRNA helicases
JY391_03005 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
QUC30757
LinkDB
All DBs
Position
614357..616249
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AA seq
630 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSRLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPTEEGEELD
LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER
RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE
VLQHFTRTRILNKPMNMQLLGDAQPHTERRGGGRGFGGERREGGRGEGRGFGGERREGGR
GDGRRFSGERREGRAPRREEGSSRRRFGDA
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcc
cttaacgatctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctg
ctgggtggtcgcgatgttctgggtatggcccagaccggtagcggcaaaaccgcagcgttc
tctttaccgctgctcaacaatcttgatcctgagctgaaggcacctcagattctggtgctg
gcaccgacccgcgaactggcggttcaggttgctgaagccatgacagatttctctaaacat
atgcgcggcgtaaacgtggtagccctgtatggcggccagcgttatgacgtgcagttacgc
gccctgcgtcaggggccgcagatcgtcgtcggtacgccgggtcgtctgcttgatcactta
aaacgcggtacccttgacctgtctcgcctgagcggtctggtactggacgaagccgatgag
atgctgcgtatgggcttcatcgaggacgtcgaaactatcatggcgcagatcccggaaggt
catcagaccgcgctgttctctgccaccatgccggaagcgattcgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcattcagtccagcgtgacaacccgtcctgacatc
agccagagctactggaccgtctggggcatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagcagaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgaccctggaa
gtggcggaagcgctggagcgtaacggctataacagcgccgcgctgaacggtgacatgaac
caggcgctgcgtgagcagacgctggaacgcctgaaagatggtcgtctggacatcctgatc
gcgaccgacgttgccgcccgcggcctggacgttgagcgtatcagcctggtcgtcaactac
gacatcccgatggattccgagtcttacgttcaccgtatcggccgtacgggccgcgccggt
cgtgcgggtcgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgtaacatc
gaacgcaccatgaagctgaccattccggaagtggaactgccgaacgcagagctgctgggc
aaacgccgtctggaaaaattcgccgcgaaagtacagcaacagctggaaagcagcgacctg
gatcagtaccgtgcgctgctggcgaaaatccagccgaccgaagaaggcgaagagctggat
ctcgaaacgctggccgctgcgctgctgaaaatggcgcagggtgaacgtaccctgatcgtt
ccgccggatgcgccaatgcgtcctaagcgtgagttccgcgaccgcgatgaccgtggtccg
cgtgaccgcaacgatcgtggtccgcgtggcgaccgagaagatcgtccgcgtcgtgaacgt
cgcgacgtaggtgatatgcagctgtaccgcattgaagtgggccgtgatgatggcgtggaa
gtgcgtcatatcgtgggtgcgattgccaacgaaggtgatatcagcagccgttacattggt
aacatcaagctgttcgcttctcactccaccattgaactgccgaaaggcatgccgggagaa
gtgctgcagcactttacgcgtacccgcatcctgaacaagccgatgaacatgcagctgctg
ggcgatgcacagccgcacactgaacgtcgtggcggtggtcgtggcttcggtggcgaacgc
cgtgaaggcggtcgtggcgaaggtcgcggtttcggcggcgagcgtcgcgaaggcggtcgc
ggtgatggacgtcgcttcagcggcgagcgtcgcgaaggtcgtgctccacgtcgtgaagag
ggttcaagccgtcgccgttttggtgacgcgtaa
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