Citrobacter sedlakii: JY391_05755
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Entry
JY391_05755 CDS
T07832
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
csed
Citrobacter sedlakii
Brite
KEGG Orthology (KO) [BR:
csed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csed03009
]
JY391_05755 (srmB)
Enzymes [BR:
csed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JY391_05755 (srmB)
Ribosome biogenesis [BR:
csed03009
]
Prokaryotic type
rRNA helicases
JY391_05755 (srmB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
DUF561
Shikimate_DH
AAA_22
CMS1
LuxC
Motif
Other DBs
NCBI-ProteinID:
QUC31245
LinkDB
All DBs
Position
complement(1222099..1223433)
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AA seq
444 aa
AA seq
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MTVTTFSELELDESLLDALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL
PALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLMQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW
RKQTMLFSATLEGEAIKDFAERLLEEPVEVSATPSTRERKKIHQWYYRADNYEHKFELLK
HLLKQEDATRTIVFVRKRERVHELAEQLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVN
VLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLL
LKIGRYIEEPLKSRVIDELRPTTRAPSEKMTGKPSKKVLAKRAEKKKEKEKEKPRVKKRH
RDTKNIGKRRKPSASDVAQQSGEE
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaacgactttttccgaacttgaactcgacgaaagcctgctggatgccctccag
gaaaaaggcttcactcgcccgaccgccattcaggctgccgccattccgcctgcgctcgat
ggccgtgatgtgctcggttctgcgccgacaggcaccggtaaaacggcggcatatctgctg
ccagcgttgcagcacctgctcgacttcccgcgtaagaaatccggcccgccgcgtatcctg
atccttacgccgacgcgcgaactggcaatgcaggtcgccgatcacgctcgcgagttggca
aagcatacccatctggatattgcgaccattaccggtggcgtcgcgtacatgaaccacgcg
gaagtgttcagcgaaaaccaggatatcgtggtcgcgaccactggtcgcctgatgcagtat
ataaaagaagagaactttgactgccgcgcggtagaaaccttgatccttgacgaagcggat
cgcatgctggacatgggttttgctcaggatattgagcacattgccggagaaacgcgctgg
cgtaagcagacgatgctgttttccgcgaccctcgaaggcgaggcgatcaaagactttgcc
gagcgtctgctggaagaaccggttgaagtgtctgccactccgtccacgcgtgagcgtaaa
aagattcatcagtggtactaccgtgccgataactacgagcataaattcgaactactgaag
cacttgttgaagcaggaagacgcgacccgcaccatcgtgttcgtgcgtaagcgtgagcgt
gttcatgaactggcagagcaactgcgtctggcaggcattaacaactgctatctggaaggc
gagatggcgcagatcaaacgtaacgaaggcatcaaacgtcttaccgacggtcgcgtgaat
gtgctggtcgccaccgacgttgcggcgcgcgggattgatattcctgacgtgagtcacgtg
attaacttcgacatgccgcgcagcggggatacctatctgcaccgtatcggtcgtacaggt
cgcgcagggcgtaaaggcacagccatttcactggttgaagcgcacgatcatctgctgctg
ctgaaaatcggtcgttacattgaggaaccgctaaaatcacgcgtgattgatgaactccgc
ccgaccacgcgagcgcccagtgaaaaaatgaccgggaaaccgtccaaaaaagtgctcgcc
aaacgcgcagagaagaaaaaagagaaggaaaaagagaagccgcgggtgaaaaaacgtcac
cgtgataccaaaaatattggtaagcgccgtaaaccgagcgctagcgacgtcgcgcagcag
tctggcgaagaataa
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