Citrobacter sedlakii: JY391_10360
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Entry
JY391_10360 CDS
T07832
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
csed
Citrobacter sedlakii
Brite
KEGG Orthology (KO) [BR:
csed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csed03032
]
JY391_10360 (topA)
03400 DNA repair and recombination proteins [BR:
csed03400
]
JY391_10360 (topA)
Enzymes [BR:
csed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JY391_10360 (topA)
DNA replication proteins [BR:
csed03032
]
Prokaryotic type
DNA Topoisomerases
JY391_10360 (topA)
DNA repair and recombination proteins [BR:
csed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JY391_10360 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
DUF4795
Motif
Other DBs
NCBI-ProteinID:
QUC32089
LinkDB
All DBs
Position
2163193..2165790
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AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPK
KDERGALVNRMGVDPWHNWDAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA
WHLREVIGGDDARYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEIDANTNTPSGDALPLQVTH
QSDKPFRPVNREQTHAAVSLLEKARYTVLEREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGNKYLPEKPNQYASKEN
SQEAHEAIRPSDVSVLADTLKDMESDAQKLYQLIWRQFVACQMTPAQYDSTTLTVGAGDF
RLKARGRILRFDGWTKVMPALRKGDEDRTLPAVNKGDELSLVELVPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTAQMEDSLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDDAETNALRAKR
RCKKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQQDPEGNKTLVRFSRKTRQQYV
AAEKDGKATGWSAFFVDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctcttgtcatcgttgagtccccggcaaaagccaaaacgatcaacaagtat
ctgggtagtgactacgtggttaagtccagcgtgggtcatatccgtgatttgccgaccagt
ggctcagcagctaaaaagagcgccgactctacctccaccaaaacggctaagaagcctaaa
aaggatgaacgtggcgcgctcgtcaatcgcatgggcgttgacccgtggcacaactgggac
gcgcattacgaagtgctgcctggtaaagagaaggtcgtctctgaattaaaacaactggct
gaaaaagccgaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccattgcc
tggcacctgcgggaagttatcggtggcgacgacgcgcgctacagtcgcgtggtgtttaac
gaaattaccaaaaatgcgattcgtcaggcgtttgagaagcccggcgaactgaatatcgat
cgtgttaacgcccagcaggcgcgtcgctttatggaccgcgtggtggggtatatggtgtcc
ccgctgttgtggaaaaagatcgcccgcggcctttctgccggtcgcgtacagtctgtcgca
gtgcgtctggttgtcgagcgtgaacgcgaaatcaaagcgtttgttccggaagagttctgg
gagatcgacgccaataccaacacgccatccggcgatgcgctaccgttacaggtgactcac
cagagcgacaaaccattccgcccggttaaccgtgagcagacgcatgccgcggttagcctg
ctggaaaaagcgcgttataccgttctcgaacgtgaagacaaaccgaccagcagtaaaccc
ggcgcgccgtttatcacctccaccctgcaacaggcggcaagtacccgtctgggctttggg
gtgaagaaaaccatgatgatggcccagcgcctgtatgaagccggttacatcacctacatg
cgtactgactctaccaacctgagccaggacgcggtgaacatggttcgcggttatatcagc
gacaactttggcaacaaatatctgcctgagaaaccgaatcagtacgccagtaaagaaaac
tcacaggaagcgcatgaagcgattcgtccttccgatgtgtcggttctggccgacacgctg
aaggatatggaatctgacgcgcagaagctgtatcagctgatctggcgtcagtttgtcgcc
tgtcaaatgacgccagcccagtatgattccaccacgctgaccgtcggcgccggtgacttc
cgcctgaaagcgcgtggacgtatcctgcgcttcgacggctggacaaaagtgatgccggcg
ctgcgtaaaggtgatgaagaccgtacgttgccagcggtgaacaaaggtgacgaattgtct
ctggttgaactggttccggcacagcattttactaagccaccggcccgctttagcgaagcc
tcgttggttaaagagctggaaaaacgcggtattggtcgtccttctacgtatgcgtcaatc
atttcaaccattcaggatcgcggctatgtgcgcgttgaaaaccgccgtttctacgcggaa
aaaatgggtgaaatcgttaccgatcgtctggaagaaaacttccgcgaactgatgaactac
gactttaccgcgcaaatggaagacagcctggatcaggtggctaaccatgaagcggaatgg
aaagcggtgctggaccacttcttcagtgattttactcagcagttagacaaagcggagaaa
gatccggaagaagggggtatgcgtccgaaccagatggtgttgaccagcatcgactgcccg
acctgtggccgcaaaatggggatccgtacggccagtactggcgtgttcctcggctgctcc
ggttacgcgctgtcaccgaaagagcgctgcaaaacgaccattaacctggtgccggaaaac
gaagtgctgaacgtgctggaaggcgacgacgcggaaacgaatgcgttacgcgccaaacgt
cgctgtaagaagtgcggcacggcgatggacagctacctgatcgatccgaagcgtaagctg
cacgtctgcggtaataacccgacctgcgacggctatgagattgaagagggcgagttccgc
atcaaaggctatgacggcccgatcgtcgagtgtgagaaatgtggttccgaaatgcacctg
aagatggggcgttttggtaagtacatggcttgcaccaacgatgagtgtaagaatacgcgt
aaaattctgcgtaatggtgaagtggcgccgccgaaagaagatccggttccgctgcctgaa
ctaccgtgtgaaaagtcggatgcgtattttgtgttgcgtgacggcgcggccggggttttc
cttgctgccaatacgttcccgaaatcccgcgaaacgcgcgcgccgctggtggaagagttg
tatcgtttccgcgatcgcctgccggaaaaacttcgctatctggccgacgcgccgcagcag
gatccggaaggcaacaaaacgctggtacgctttagccgcaaaaccaggcagcagtatgtt
gcggcggaaaaagacgggaaggcgaccggctggtctgcgttcttcgttgacggtaaatgg
gttgaagggaagaagtaa
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