Citrobacter sedlakii: JY391_10430
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Entry
JY391_10430 CDS
T07832
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
csed
Citrobacter sedlakii
Pathway
csed02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
csed00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
JY391_10430 (pdeR)
Enzymes [BR:
csed01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
JY391_10430 (pdeR)
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GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
GGDEF_2
PAS_10
Motif
Other DBs
NCBI-ProteinID:
QUC32103
LinkDB
All DBs
Position
complement(2177112..2179103)
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AA seq
663 aa
AA seq
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MKESRESATLYRFLGTHCPYWRLSDDADVLHLSLTEAAEHDEALALAPGQAARIREMTVI
TSSLLITLPLESSEVQIHLVGRKINKHEWAGSASAWHDTPSVARDLAKGLSFAEQVVSEA
NSVIVILDSRGNIQRFNRLCEEYTGLKEQDVIGQSVFRLFMSRREAAASRRNISGFFRNG
NSYEVERWVKTRQGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRVLANTD
TITGLPNRNAIHELINDAVGDAHAGQVGIVYFDLDNFKKVNDAYGHMFGDQLLQAVSLAL
LSCMEENQLLARLGGDEFILLATHTSQGALEAVASRILTRLRQPFRIGLIEVYTGCSVGI
AMAPLHGEDSDSLIRNADTAMYTAKEGGRGQFCVFSPEMNERVFEYLWLDTHLRKALEND
QLLIHYQPKITWRGEVRSLEALVRWQSPERGLISPGEFISYAEESGLIVPLGRWVLLDVV
RQVAKWRDKGIHLRVAVNISARQLADQTIFTDLRQVLHELNFEYCPIDVELTESCLIENE
TLALSVIEQFSQLGAQVHLDDFGTGYSSLSQLTRFPIDAIKLDHMFVRDIHKKTASQSMV
RAIVAVAQALNLQVIAEGVESAKEDAFLTKNGINERQGFLFAKPMPAAAFERWYKRWRNK
TQR
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagagtcgggaatccgcgacgttgtatcgttttctgggcacacactgtccttac
tggcgcttgtcagatgatgccgacgtactgcatttatcacttaccgaagccgcagaacat
gatgaggcgcttgcgctcgctcccgggcaggccgcacgaattcgcgaaatgaccgttatc
acgtccagcctgttgattacgttacccctcgagagcagcgaggtgcagatacatctggtg
ggtcggaaaatcaataagcacgagtgggcaggcagtgcctcagcctggcatgacacgccc
tccgtcgcgcgcgatctggctaaggggctgtccttcgccgaacaggtggtttcagaagcg
aattcggtcatcgtgatccttgacagccgcggcaatattcagcgcttcaaccgcctgtgc
gaagaatataccggacttaaagagcaggatgtcattggtcagagcgtcttcaggctgttt
atgagccgccgtgaagccgctgcttcgcgacgcaatatcagcggcttttttcgtaacgga
aattcttatgaggtcgaacggtgggtaaaaacccgccagggtcagcgtctgtttttattt
cgcaataagttcgtccatagcggtagcgggaagaatgaaatatttctcatttgttcaggt
accgacattaccgaagagcggcgcgcccaggagcgtctgcgagtactggcgaatactgac
actatcaccggactgcctaaccgcaacgccatccatgagctgatcaacgacgctgtcggg
gatgcgcacgcaggtcaggtcgggatcgtgtattttgatctggataattttaaaaaggtg
aacgacgcttatgggcatatgttcggcgaccagctattacaggcggtctccctggctctg
ctgagctgtatggaagaaaaccagttgctggcgcggctgggcggcgacgaattcattctg
cttgccacccacacctctcagggggcacttgaggccgtcgcgtcgcgtattctgacccgc
cttcgccagccctttcgcatcggtctgatcgaggtctataccggctgctccgtgggcatc
gcgatggcgcccttgcatggcgaggacagcgacagtctgatccgcaatgccgataccgcc
atgtacacagctaaagaaggcggccgcggtcagttctgcgtcttctcaccggaaatgaat
gagcgggtctttgaatacctctggctcgatacgcatctgcgcaaagcgctcgaaaacgat
cagctactgatccattatcagccaaagattacctggcgcggtgaagtacgcagccttgaa
gcgctggtgcgctggcagtcgccggagcgcggtttgatttcgccaggagagtttatctcc
tatgccgaggagtcgggactgattgtaccgcttggacggtgggtgctgctcgatgtggtg
cgccaggtggcaaaatggcgcgataaaggcattcacctgcgcgtggcggttaatatttcg
gcgcgtcagcttgccgaccagacgattttcaccgacctcagacaggttttacacgagctg
aatttcgaatactgcccgatcgacgttgagttaacggaaagctgcctgattgaaaacgag
acgctggccctgtcggtcattgagcagtttagccagttgggcgctcaggttcatcttgat
gatttcggtaccggctactcgtcgctttcacaactgacgcgttttccgattgacgctatc
aagctggatcacatgttcgtcagagatattcataaaaaaaccgcttcccagtccatggta
cgcgccatcgtcgccgtggcgcaggcgctcaaccttcaggtcatcgccgaaggggtggaa
agcgccaaagaggacgcgttcctgactaaaaacggtatcaatgaaagacaaggattttta
tttgcaaagccgatgcccgccgcggcatttgaacgctggtacaaacgctggcgcaacaaa
acacagcgctga
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