Citrobacter sedlakii: JY391_10435
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Entry
JY391_10435 CDS
T07832
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
csed
Citrobacter sedlakii
Brite
KEGG Orthology (KO) [BR:
csed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
csed03016
]
JY391_10435
Enzymes [BR:
csed01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JY391_10435
Transfer RNA biogenesis [BR:
csed03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JY391_10435
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
ODP
OSR1_C
Motif
Other DBs
NCBI-ProteinID:
QUC32104
LinkDB
All DBs
Position
complement(2179361..2181295)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
VAVIHSEKDRESAEPEELVEPFLTRFVGKVQGKNDRLSIVPDHPLLKDAIPCRAARGVEH
DFKEGDWAVAEMRRHPLKGDRTFYAELTQYITYADDHFVPWWVTLARHNLEKEAPDGVAT
EMLDEGLTRQDLTALNFVTIDSASTEDMDDALYAEELADGKLQLTVAIADPTAWIAEGSK
LDNAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRPREVRPVLACRMTIAADGALEDDMVF
FAATIESKAKLAYDSVSDWLENAGSWQPESDDIAHQIRLLQQICLRRGEWRHHHALVFKD
RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHTGFD
PANTEALSALLKNHDVHVDPQEVLTLEGFCKLRRELDAQPSGFLDSRIRRFQSFAEISIE
PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETIARPHDTTTVQMAERRRLNRM
AERDVGDWLYARFLNDKAGTDIRFAAEIIDVSRGGMRVRLVDNGAVAFIPAPFLHAVRDE
MVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggacaacccgctgctagcgcagcttaaacagcaactgcattcccagacgccg
cgcgctgaaggggtggtaaaagccacggaaaaaggctttggcttcctggaagtcgatgcg
caaaaaagttacttcatcccgccgccgcagatgaaaaaagtgatgcatggcgaccggatt
gtcgcggtgatccacagcgaaaaagatcgcgagtccgctgagccggaagaactggttgaa
cccttcctgacccgctttgtcggaaaagttcagggcaaaaacgatcgcctgtctattgtt
ccggatcacccgctgctgaaagatgctatcccctgtcgcgccgcgcgtggcgtagagcat
gactttaaagaaggtgactgggcggtcgccgagatgcgccgccatccgttaaaaggcgat
cgcaccttctatgccgagttaacccagtacatcacctacgcagatgaccactttgtgccg
tggtgggtaacgctggcgcgccacaatctggaaaaagaagccccggacggcgtggccact
gaaatgctcgacgaaggcttaacgcgtcaggatctgaccgccctgaatttcgtcactata
gacagcgccagcaccgaagatatggatgacgcgctgtatgccgaagaactggctgacggt
aaattacagctgaccgttgcgattgccgacccgaccgcgtggatcgctgaaggtagcaaa
ctggataacgctgcgaaaatacgcgcgtttaccaactatctcccagggttcaacatcccg
atgctaccgcgtgaactctctgacgatctctgctcgttgcgtccgcgcgaagtccgtcct
gtgctggcctgccgtatgaccattgcggcggatggcgcccttgaagacgatatggttttc
ttcgcggcgaccatcgagtcaaaagccaaactggcctatgacagcgtctctgactggctg
gaaaacgccggtagctggcagcctgaaagcgacgatatcgcgcatcaaattcgtctgctg
cagcaaatttgtctgcgtcgcggcgagtggcgccatcaccacgcgctggtcttcaaggac
cgtcctgattatcgctttattctgggtgaaaaaggtgaagtgctggatatcgtggcagag
ccgcgccgcatcgccaaccgtatcgttgaagaagcgatgatcgccgccaatatatgcgcc
gcccgcgttctgcgtgacaaactgggctttggcatttacaacgtgcataccggttttgat
ccggcgaatacggaagcgctgtcggcgctgctgaaaaatcacgacgtccatgtcgatccg
caagaagtgttgacccttgaaggtttctgcaaactgcgtcgcgaactggatgcacagccg
tccggcttcctcgacagccgcattcgtcgcttccagtccttcgccgaaatcagcattgag
ccgggtccgcactttggtctgggtcttgaagcgtatgcgacctggacctcgccgattcgt
aagtatggcgatatgatcaaccatcgcctgctgaaagcggtcattaaaggtgaaaccatt
gcccgtccgcacgacaccaccaccgtgcagatggcggaacgccgtcgcctgaaccgtatg
gcggaacgcgacgttggcgactggctgtacgcccgtttcctgaacgacaaagccggcacg
gacatccgttttgcggctgaaatcattgatgtcagccgtggcggtatgcgcgttcgtctg
gtggataacggcgcggttgcctttattccggcgccgttcctccatgccgtccgcgacgaa
atggtttgcagccaggaaaacggcaccgtacagattaaaggcgagaccgtgtataaagtc
acggacgtgatcgatgtgaccatcgccgaagtgcggatggaaacgcgcagcatcatcgcc
cgtccggccgcctga
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