Entry |
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Symbol |
dnaE
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Name |
(GenBank) DNA polymerase III subunit alpha
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KO |
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Organism |
csed Citrobacter sedlakii
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:csed00001]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JY391_17415 (dnaE)
03430 Mismatch repair
JY391_17415 (dnaE)
03440 Homologous recombination
JY391_17415 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:csed03032]
JY391_17415 (dnaE)
03400 DNA repair and recombination proteins [BR:csed03400]
JY391_17415 (dnaE)
Enzymes [BR:csed01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JY391_17415 (dnaE)
DNA replication proteins [BR:csed03032]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JY391_17415 (dnaE)
DNA repair and recombination proteins [BR:csed03400]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JY391_17415 (dnaE)
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
complement(3630970..3634452)
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AA seq |
1160 aa
MSEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA
GIKPIVGADFHVQSEQMGEELTHLTVLASNNTGYQNLTLLISKAYQRGYGAAGPVIDRDW
LIELKEGLILLSGGRMGDVGRSLLRGNSALVEECVSFYETHFPDRYFLELIRTGRQDEES
YLHAAVELAEARGLPVVATNDVRFINSDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM
RTEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDYLVKKSKEGL
EERLEFLFPDAEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKG
VGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY
LTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD
RLLNDLRGLIGSEQVELEFD |
NT seq |
3483 nt +upstreamnt +downstreamnt
atgtctgaacctcgtttcgtccacctgcgggtgcacagcgactactccatgatcgatggg
ctggccaaaaccggaccgctggtgaaaaaggcggccgcactgggcatgcccgcgctggcg
atcaccgattttaccaacctttgcggtctggtgaagttctacggggcgggtcatggcgcc
gggattaaacccattgttggcgccgatttccacgttcagagcgaacaaatgggtgaagaa
ctcactcatttaacggtgctggcgtcgaataacaccggttatcagaaccttacgctgctt
atttctaaagcttatcaacgcggttacggcgcggcgggtccggttatcgatcgcgactgg
ctgatcgaactgaaagaggggttaattctgctttccggtggacgcatgggcgacgttggc
cgcagcctgttgcggggaaatagcgcgctggttgaggagtgcgtctcgttctatgaaacg
catttcccggatcgttacttccttgagctgatccgtaccggcagacaggatgaagaaagc
tatttgcacgcagccgtagaactggcggaagcgcgcggcttgccggtcgtcgctaccaac
gacgtgcgctttattaacagcgatgattttgacgcgcatgaaattcgcgtcgccattcac
gacggttttactctcgacgaccctaagcgcccacgtaactattcgccgcagcagtatatg
cgtacggaagaggagatgtgcgagctcttctcggacattccggaagcactggaaaacacc
gttgagatcgccaaacgctgtaacgtgacggtgcgtctgggcgaatatttcctgccgcag
tttccgaccggtgatatgaccaccgaagactatctggtcaagaaatcgaaagaaggtctt
gaagagcgtcttgaattcctgttcccggatgcagaagagcgtaaaaaacgccgcccggaa
tatgacgagcgtctggacattgagctacaggttattaaccagatggggttccccggctac
tttctgatcgtgatggagtttatccagtggtcgaaggataacggcgtgccggtcgggcca
ggccgtggttccggcgcgggatcgctggtggcctacgcgctgaaaatcaccgacctcgac
ccgctggaatttgacctgctgttcgaacgcttccttaacccggagcgtgtttcgatgcct
gacttcgacgttgacttctgtatggagaaacgcgaccaggtgatcgagcacgtggcggat
atgtatgggcgtgatgcggtatcgcagattattactttcggtaccatggcggcgaaagcg
gttatccgtgacgtgggccgcgtgctgggccatccgtatggcttcgtagaccgtatttca
aagctggtgccgcccgatccgggcatgacgctggcaaaagcgtttgaagctgagccgcaa
ctgccggaaatctacgaagccgacgaagaggtcaaagcgctgatcgacatggcgcgtaag
ctggagggcgtcacgcgtaacgccggtaagcacgccggtggtgtggttatcgccccgacg
aaaattaccgattttgcgccgctgtattgcgatgagcaggggctgcatccggttacgcag
tttgataaaaacgacgtggaatacgccgggctggtgaagtttgacttcctcggcctgcga
acgctcacgattatcaactgggcgctggaaatgattaacgcccgtcgtgagaaaaacggc
gagccgccgctggatattgcggccatcccgctggatgacaagaaaagcttcgacatgctg
caacgctcggaaaccacggcggtgttccagcttgaatcccgcggcatgaaagatttgatc
aagcgtctgcaacctgactgctttgaagatatgatcgcgctggtggcgctgttccgcccg
ggcccgctgcagtcggggatggtggataacttcatcgaccgtaagcacgggcgtgaagaa
atttcttatcctgacgtacagtggcagcacgaaagcctgaagcccgtactggaaccgacc
tatggcatcatcctgtatcaggaacaggtcatgcagatcgcccaggtgctgtctggttat
accctcggcggcgcggacatgttacgtcgtgcgatgggtaagaaaaagccggaagagatg
gccaaacagcgatctgtctttgaagagggcgcgaagaagaacgggatcgacggcgaactg
gcgatgaaaatctttgacctggtggagaaattcgccggttacggatttaacaagtcacac
tccgccgcgtatgcgctggtctcctatcagacgctatggctgaaggcgcactatcccgcc
gaatttatggcggcggttatgaccgccgatatggataacacggaaaaagtggtaggtctg
gtggacgaatgttggcggatggggctgaagatcctgccgccggacatcaattccggcctg
tatcactttcacgttaacgacgaaggtgagatcgtttacggtatcggggcgatcaaaggt
gttggtgaaggcccgattgaggcgatcatcgaggcgcgcaacaacggcggatacttccgc
gagctgttcgatctttgcgcccgtactgacaccaaaaaactgaaccgccgggtactggaa
aagttaattatgtccggggcgtttgaccgcctgggaccccaccgcgccgcgttgatgaat
tcgcttggcgatgcgttaaaggccgccgatcaacatgccaaagcggaagcgattggtcag
gccgatatgttcggcgtactggcggaagagccggaacaaattgaacagtcctacgccagc
tgccagccgtggccggaacaagtggtgctggatggcgagcgcgaaacgttgggtctgtac
ctgacggggcaccccatcaaccagtatttaaaagaaattgagcgctatgtcggaggctac
aggctgaaagacatgcatccgacagaacgtggtaaagtcaccacggctgcggggctcgtc
attgccgcaagggttatggtcaccaagcgcggcaatcgtatcggcatctgtacgctggat
gaccgttccggacgtcttgaagtcatgttatttaccgacgctctggataaataccagcaa
ctgctggaaaaagaccgcatacttatcgtcagcggacaggtcagctttgatgacttcagc
ggggggcttaaaatgaccgcccgcgaagtgatggatattgacgaagcccgggaaaaatat
gctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccga
ctccgtcagtctctggaaccccaccgctcggggacaattccagtacatctctactatcag
agggcggatgcgcgcgcgcggttgcgttttggcgcgacgtggcgcgtttctccgagcgat
cgtttactcaacgatctccgtggcctcattggttcggagcaggtggaactggagtttgac
taa |