Chlamydia serpentis: C10C_0863
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Entry
C10C_0863 CDS
T08163
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor,transcription-repair coupling factor,Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein),transcription-repair coupling factor,TRCF domain
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csee
Chlamydia serpentis
Pathway
csee03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C10C_0863 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csee03400
]
C10C_0863 (mfd)
Enzymes [BR:
csee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C10C_0863 (mfd)
DNA repair and recombination proteins [BR:
csee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C10C_0863 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
DUF3638
RecG_dom3_C
ERCC3_RAD25_C
AAA_19
Motif
Other DBs
NCBI-ProteinID:
SPN74001
UniProt:
A0A2R8FCB4
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All DBs
Position
I:complement(988023..991280)
Genome browser
AA seq
1085 aa
AA seq
DB search
MAMDFNPVNLDFSISKEFNGGSLPLLLENIHLGATAFLASKMFRDSRRSIIMITTPRRLD
DLFENLKSFLEKPPIEFPASEIDLSLKLVNIDAVGKRDKVLYELSQEDTPIFCITTLKAL
LEKTRSPKATSQQHLELQVGDILDPETSIELCRNLGYSHTTLTSEKGEFSHRGGIIDIFP
LSSPEPFRIEFWGEKIISIRSYNPSDQLSTGKVSKISISPAYLEESGEAKYSHSLLDYFR
SPPLYLFDNLEILEDDFADISGTLSSLPDRFFSIGYLYDRIATSRQVYFSEAPFPNVKIL
KENRVVIEAFHQNIEAYRESLPIIYPTHIVQDASNPLLTFLKNIQEYIPPHGKPLKIAIY
STKTKSLKEARTLAETISRADIEIYEQTGNLTSSFALVNEAFAAISLSEFASTKVLRRQK
QRSHFSVTTEEVFVPIPGETVVHLHNGIGKFVGVEKKPNHLNIETDYLVLEYADKARLYV
PSNQAYLISRYVGASDKSVDLHHLNSSKWKRSRDLTEKSLIVYAEKLLQLEAQRSTIPAF
IYPPHGAAVIKFAETFPYEETPDQLKAIEEIYNDMMSPKLMDRLICGDAGFGKTEVIMRA
AVKAVCDGHRQVIVMVPTTILATQHYETFKQRMAGLPIEITMLSRFSQPKAQKMIFEKMA
SGQIDIIIGTHKLINKNLEFKNPGLLIIDEEQRFGVKVKDSLKERYPTIDCLTVSATPIP
RTLHMSLSGARDLSVIAMPPLDRLPVSTFVMEHNNETLTAALRHELLRGGQAYVIHNRIE
SIFTLAETIRNLIPEARIGVAHGQMAAEDLSNIFTKFKNQQTNILVATALIENGIDIPNA
NTILIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVSHLDRLSGQAAKRLAALNKQEYGG
GMKIALHDLEIRGAGNILGTDQSGHIGAIGFNLYCKLLKKAIVALKKHTSPLLFNDDVKI
EFPYNSRIPDTYIETASMRIEFYQKIGNAEDDEELAAIQEEMRDRFGPQPQEVSWLFALA
QVRLFALQHSISSIKGTPNALYIQKCLSKSEQTKKTLPYALSPTPELLVKEVIESIERGL
LVKAS
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggatttcaacccagttaatttagatttttctatttccaaagaattcaatggg
ggatctcttcccttactactagaaaatattcatctaggagccacagcatttcttgcatcc
aagatgtttcgagacagccgtcgttctataattatgattacgacgccaaggcgtctcgat
gatctcttcgaaaatttaaagtcatttttagagaaacctcctatagaatttccagcttcc
gaaattgatctttctctaaaattagtaaatatagatgcagtggggaagcgagataaggtc
ctgtatgaactgagtcaggaagatactccgatattctgtataactacattgaaagctctt
ttagagaaaacccgttccccaaaagcaacaagccaacaacatcttgaacttcaagttgga
gatattttagatccagaaacttctatagaactatgtaggaatttaggatactctcacaca
acgctaactagtgaaaaaggagagttttctcatcgtgggggcattattgatatttttcct
ttatcctctcccgagccttttcgcatagaattttggggagaaaagattatctctatcagg
tcttacaatccttctgaccagttatctacaggaaaagtctcaaaaatttctatctctcca
gcttatctagaggagtctggagaagcaaagtattctcactctctgttagactattttaga
tctcctcctctctatctatttgataacctagagattttagaagacgattttgctgatatt
tctggaacactttcttctcttccagatagatttttctctataggatatctatatgatcgc
attgcaacgtctcgtcaagtctatttctctgaagctcctttccctaatgtaaaaattctg
aaagaaaatcgagtagtgatcgaagcattccaccaaaatatagaagcatatcgcgagtct
cttcctataatttacccgacacacatcgttcaggatgcgagtaatcctctactgaccttt
ttaaaaaatatccaagaatatattccgccccatgggaaaccattaaaaatagcaatttac
agtacaaaaactaaatctttaaaggaggcgcgaactttagcagaaactattagtagagct
gatattgagatctatgaacaaacaggaaatttgacatcgagttttgcattagtaaacgaa
gcttttgcagcaatttctctatccgagtttgcttctacaaaagtactacggagacagaag
caacgctctcacttttcagttactactgaagaagtttttgttccgataccaggtgaaact
gttgttcatctccataatggaattggcaagtttgttggagtagaaaaaaaacctaatcat
ctcaatattgaaacagactatcttgttctagagtacgcggacaaagctagactttatgtt
ccttcgaatcaagcatatttgatttcacgttatgtaggtgcttctgataaatctgtagat
cttcatcatttgaatagttcgaaatggaaacgctctcgagacctcacagaaaaatctttg
atcgtttacgcagaaaagcttctacaattagaagctcaacgttcgacaattcccgccttt
atttatccgcctcatggagcagcggtgatcaagtttgccgaaacttttccttatgaagag
actcccgatcaattaaaagctattgaagaaatttataatgatatgatgtcccctaagctc
atggatagattgatttgcggggatgctggctttgggaaaaccgaggtaattatgagagct
gctgtaaaagcagtttgtgatggtcatcgtcaagttattgttatggttcctacaacaatc
ttggcaacgcaacattacgagacctttaaacaaagaatggctgggttaccgatagaaatt
accatgctctctcgcttttcccaacccaaagcacagaaaatgatctttgaaaaaatggca
tcgggacaaattgacattatcattgggactcataagctgattaacaaaaatttggaattt
aaaaaccccggtttattaattattgacgaagaacaacgttttggagtcaaggttaaagat
agtcttaaagaacgctatcctactatagattgtcttacagtatcggcaactcctatccca
cgaacattacacatgtctttatctggagctcgagatttatctgtgattgctatgcctccc
ttggatcggttgcctgtaagtacttttgtcatggaacataacaacgagacattaaccgct
gctttaaggcacgagcttcttcggggaggacaagcctatgtgattcacaatcgcattgag
agtatttttactcttgctgaaacaatccgtaatcttattcctgaagctcgaattggtgtt
gcccatggtcagatggctgcagaagatctatctaatatctttacaaaattcaaaaatcaa
cagaccaatatcttagtcgcaactgcattaatagaaaacggtattgacattcctaatgcc
aacaccatcttgatagaccatgcggataagtttggaatggctgatctgtatcaaatgaaa
ggacgtgtgggacgttggaataaaaaggcatactgttattttctagtttctcatctagat
agattatcgggacaagcggctaagcgacttgccgctttaaataagcaagaatatggtggg
gggatgaaaatagctcttcatgatttggagatccgtggtgccggaaatattctagggaca
gatcaatctgggcatataggagctataggatttaatctctattgtaagttattaaaaaaa
gctattgtagctttgaaaaagcacacttcacctttgctatttaatgacgatgtaaagata
gagtttccctacaattcgcgtattccggatacttacatcgagacagcatcgatgcggatt
gaattttaccaaaagattggcaatgctgaagatgatgaagagctcgccgcaatacaagaa
gaaatgcgcgatcgctttggtccccaacctcaagaagtctcctggctttttgccttggcc
caagtacgcctatttgctctacagcatagcatttccagcatcaaaggaactcccaatgct
ttgtatatccaaaaatgccttagtaaatctgaacaaacaaagaagacactcccctatgct
ctatctccgactcctgaacttttagtcaaagaagttatcgagtctatagaaaggggtctc
ttagtaaaagcttcgtaa
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