Clavibacter seminis: KYT88_00535
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Entry
KYT88_00535 CDS
T11076
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
csei Clavibacter seminis
Pathway
csei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KYT88_00535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csei03019
]
KYT88_00535
Messenger RNA biogenesis [BR:
csei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KYT88_00535
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
YicC-like_C
ODP
Motif
Other DBs
NCBI-ProteinID:
UKF25213
UniProt:
A0ABY3TC25
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Position
complement(108330..110024)
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AA seq
564 aa
AA seq
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MPPTSHAHALDIAKPGRLPRGGLRVTPLGGLGDVGRNMTLFEYEGELLIVDCGVLFPEES
QPGINVILPDFSTLRGRLDKITGIVLTHGHEDHIGGVPYLLQERPDIPVIGSRLTLAFIS
AKLEEHKIKPVTRQVKEGDRITAGKFDLEFVAVNHSIPDGLAVAIRTGAGMVLHTGDFKM
DQFPMDRRLTDLGAFARLGEEGVDLFLTDSTNAEVPGFTTAEKDLTPAIEKVFRTAPKRI
VVSSFASHVHRIQQVLDSAEQYGRKVSFVGRSMVRNMKIASDLGYLRIPKGLVIDLKALN
KLPDDKVTLICTGSQGEPMAALSRMARREHIIEVGEGDTILLASSLIPGNENAIYGVING
LIRWGADVVHKGNAKVHVSGHASAGELVYCYNLVKPRNVLPVHGEWRHLVANAALAESTG
VKNALVIEDGVSVDLVNGRASISGRVPAPYVFVDGMTIGVATEEALEERRTLAAEGQITV
LGIFDEKEQKLIHPAELITRGFVEHDGWIPEAEAAISTALKNAAAKRHLDGVAAERAMSD
GLQRWLQRRHRRTPVVTVIVVDAD
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgcctcccacgtcccacgcccacgccctcgacatcgccaagcccgggcgcctgccccgc
ggcggcctgcgcgtcacgcccctcggcggcctcggcgacgtcggccgcaacatgacgctg
ttcgagtacgagggcgagctgctcatcgtcgactgcggcgtcctcttccccgaggagagc
cagcccggcatcaacgtgatcctccccgacttcagcaccctgcgcgggcgcctcgacaag
atcacgggcatcgtcctcacgcacggccacgaggaccacatcggcggcgtcccctacctc
ctgcaggagcggcccgacatccccgtcatcggatcccggctcacgctcgcgttcatcagc
gcgaagctcgaggagcacaagatcaagcccgtcacccgccaggtgaaggagggcgaccgc
atcaccgcgggcaagttcgacctcgagttcgtcgccgtgaaccactccatcccggacggc
ctcgccgtcgcgatccgcaccggcgccggcatggtcctgcacacgggcgacttcaagatg
gaccagttcccgatggaccgccgcctcaccgacctcggcgcgttcgcacgcctcggcgag
gagggcgtggacctgttcctcaccgactcgaccaacgcggaggtccccggcttcacgacc
gccgagaaggacctcacgcccgccatcgagaaggtgttccgcacggcgcccaagcgcatc
gtcgtctccagcttcgcgagccacgtgcaccggatccagcaggtgctcgactccgccgag
cagtacggccgcaaggtctcgttcgtgggccgctcgatggtccgcaacatgaagatcgcg
tccgacctcggctacctgcgcatccccaagggcctcgtcatcgacctcaaggcgctgaac
aagctgccggacgacaaggtcacgctcatctgcacgggttcgcagggcgagccgatggcg
gcgctgagccgcatggcgcgccgcgagcacatcatcgaggtgggcgagggcgacacgatc
ctcctggccagctcgctcatccccggcaacgagaacgccatctacggcgtgatcaacggc
ctgatccgctggggcgcggacgtcgtgcacaagggcaacgcgaaggtgcacgtctccggc
cacgccagcgccggcgagctcgtctattgctacaacctcgtcaagccgcgcaacgtgctg
cccgtgcacggcgagtggcgccacctcgtcgccaacgccgcgctcgccgagagcacgggc
gtgaagaacgcgctcgtcatcgaggacggcgtgagcgtcgacctggtcaacggccgcgcc
tccatctccggccgcgtgcccgcgccctacgtcttcgtcgacggcatgaccatcggcgtc
gcgaccgaggaggccctcgaggagcgccgcacgctggccgccgaggggcagatcaccgtg
ctcggcatcttcgacgagaaggagcagaagctgatccacccggccgagctcatcacgcgc
ggcttcgtggagcacgacggctggatccccgaggccgaggccgccatcagcaccgcgctc
aagaacgcggccgccaagcgccacctcgacggcgtcgccgccgagcgcgccatgagcgac
ggcctgcagcgctggctccagcgccgccaccgccgcacgccggtcgtcacggtgatcgtg
gtggacgcggactag
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