Clavibacter seminis: KYT88_04795
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Entry
KYT88_04795 CDS
T11076
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
csei Clavibacter seminis
Brite
KEGG Orthology (KO) [BR:
csei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csei03032
]
KYT88_04795 (topA)
03400 DNA repair and recombination proteins [BR:
csei03400
]
KYT88_04795 (topA)
Enzymes [BR:
csei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KYT88_04795 (topA)
DNA replication proteins [BR:
csei03032
]
Prokaryotic type
DNA Topoisomerases
KYT88_04795 (topA)
DNA repair and recombination proteins [BR:
csei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KYT88_04795 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
UKF26021
LinkDB
All DBs
Position
1005960..1008929
Genome browser
AA seq
989 aa
AA seq
DB search
MPGTKKLVIVESPAKAKTIAQYLGSGYEVQASVGHIRDLIEPKNLPPELKKGTLGKFSVD
VENGFEPYYVVSDQKKKTVADLKRALKDADELFLATDEDREGEAIAWHLLQVLKPKVPVK
RMVFHEITKEAIERARDSTRDIDTALVDAQETRRILDRLYGYEVSPVLWRKVGPGLSAGR
VQSAATRLVVDRERERLAFVTASYWDLTASLSPVDQQLPFDARLVRIDGARIATGRDFDD
KGALKNDSRPLDASSAEALAEALRDPSVPLKVQSVESKPYTRRPAAPFTTSTLQQEAARK
LRFSARQTMSVAQSLYENGYITYMRTDSPSLSQQAINAARKQAAELYGPETVPDKPRLYA
GKSKNAQEAHEAVRPAGETFRTPQQLASTLRGNDHKLYDLIWKRTIASQMADAKGSTASV
VIAAGPTSAGEVAEFAASGTVITFRGFLAAYEESRDEERHGAAEPREAKLPDLKKGQDLR
LVDVDAKGHETSPPPRYTEASLVKTLEELGIGRPSTYAAIISTIVDRGYVTPRGTALVPN
WIAFSVVRLLEEFFTELVQYDFTAGMEDDLDRIAEGSAERVDWLKGFYYGNDAHKGLRPT
IDNLGEIDAKEINSLRIADDITLRIGKYGPYLEVHEEGAAADATPRRVNLPEDLAPDELT
AAKARELIDAPVVTDRVIGINPENGKQVVAKDGRYGPYVTELDPEPEEAPAAPADGVDPA
TGEVLESASATTTAAPAKKAPARKPAAKKAAAVKPRTASIFKSMDLATVDLETALRLLDL
PRVVGEDPETATAITAQNGKYGPYLKKGTDSRSLTNEEQIFEIDLPGALEVFAQPKYGAR
RPSSALKEFDADPVSGKGIKVKDGRFGPYVTDGETNATIPKSESVEDIDFDRAVELLADK
RAKGPAKPKSKAKAPAKAKAKAPAKAKTTAAKSTAAKTGTAKTTAANSTTAKTATAKTTA
ARSAAATKAAATRAANKAAAAAATASDAT
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
gtgcccggcacgaagaagttggtcatcgtcgagtcgccggccaaggccaagacgatcgcc
cagtacctgggcagcggctacgaggtgcaggcctccgtcggccacatccgcgacctcatc
gagcccaagaacctgccgcccgagctgaagaagggcacgctcggcaagttctccgtcgac
gtggagaacggcttcgagccgtactacgtcgtcagcgaccagaagaagaagacggtcgcc
gacctcaagcgggcgctcaaggacgccgacgagctcttcctcgcgacggatgaggaccgc
gagggcgaggccatcgcgtggcacctgctccaggtgctgaagccgaaggtgccggtcaag
cgcatggtcttccacgagatcaccaaggaggccatcgagcgagcccgcgacagcacgcgc
gacatcgacacggccctcgtggacgcgcaggagacgcgacgcatcctcgaccgcctctac
ggctacgaggtgtcgcccgtcctctggcgcaaggtggggcccggcctctccgcgggccgc
gtgcagtccgccgcgacgcggctggtcgttgaccgcgagcgcgagcggctggccttcgtc
accgcctcgtactgggatctgacggcatcgctctcgccggtcgaccagcagctgccgttc
gacgcccgcctcgtccgcatcgacggtgcgcgcatcgccacgggccgcgacttcgacgac
aagggcgcgctcaagaacgactcgcgcccgctcgacgcgagcagcgcggaagccctcgcg
gaggcgctccgcgacccgtccgtgccgctgaaggtgcagagcgtcgagtcgaagccctac
acgcgtcgccccgccgcgccgttcaccacgtccacgctgcagcaggaggcggcgcgcaag
ctccgcttctccgcgcggcagaccatgagcgtcgcgcagtcgctctacgagaacggctac
atcacctacatgcgcaccgactcgccctcgctctcgcagcaggcgatcaacgcggcgcgc
aagcaggcagcggagctctacgggcccgagaccgtgccggacaagccgcgcctctacgcg
ggcaagagcaagaacgcgcaggaggcccacgaggccgtccgtcccgccggggagaccttc
cgcacgccgcagcagctcgcatccacgctgcgcggcaacgaccacaagctctacgacctc
atctggaagcgcaccatcgcctcgcagatggccgacgcgaagggatccaccgcgtcggtc
gtcatcgccgcgggccccacgtccgcgggcgaggtggccgagttcgccgcctcgggcacg
gtcatcacgttccgcgggttccttgccgcgtacgaggagagccgcgacgaggagcgccac
ggcgcggccgagccgcgcgaggccaagctgcccgacctcaagaagggccaggacctgcgc
ctcgtcgacgtcgacgcgaaggggcacgagaccagccccccgccgcgctacacggaggcg
agcctcgtcaagacgctcgaggagctggggatcggtcgtccgtcgacctacgcggccatc
atctcgacgatcgtcgaccgcggctacgtcacgccgcgcggcacggccctcgtcccgaac
tggatcgccttctcggtggtgcggctgctcgaggagttcttcaccgagctcgtgcagtac
gacttcaccgcgggcatggaggacgacctcgaccgcatcgcggagggttcggccgagcgc
gtcgactggctgaagggcttctactacggcaacgacgcgcacaaggggctccgccccacc
atcgacaacctcggcgagatcgacgccaaggagatcaactcgctgcgcatcgcggatgac
atcacgctgcgcatcggcaagtacgggccctacctggaggtccacgaggagggtgccgcc
gcggacgcgacgcctcgccgcgtcaacctgccggaggacctcgcgccggacgagctgacg
gcggccaaggcccgcgagctcatcgacgcaccggtcgtcaccgatcgcgtcatcggcatc
aaccccgagaacggcaagcaggtcgtggcgaaggacggtcgctacggcccctacgtcacc
gagctcgatcccgagcccgaggaggcgcccgccgcccccgctgacggcgtcgacccggcg
acgggtgaggtgctcgagagcgcgtcggcgacgaccactgctgcacccgcgaagaaggcg
cccgccaggaagccggcggcgaagaaggcggcggccgtcaagccgcgcaccgcctccatc
ttcaagtcgatggacctcgccacggtcgacctcgagacggcgctgcggctgctcgacctc
ccgcgggtcgtgggcgaggatccggagacggcaacagccatcaccgcgcagaacggcaag
tacggcccgtacctgaagaagggcacggactcgcgctcgctcacgaacgaggagcagatc
ttcgagatcgacctgcccggtgccctcgaggtgttcgcgcagcccaagtacggcgcccgg
cgcccgtcgagcgcgctgaaggagttcgacgcggatcccgtgagcggcaagggcatcaag
gtgaaggacgggcgcttcggtccgtacgtcacggacggcgagaccaacgcgacgatcccg
aagagcgagtccgtcgaggacatcgacttcgaccgtgcggtcgagctcctcgccgacaag
cgcgccaaggggccggcgaagcccaagtccaaggccaaggctccggccaaggcgaaggcc
aaggcacccgcaaaggcgaagacgacggcagcgaagtcgaccgcggcgaagaccggcacc
gcgaagacgaccgccgcgaactcgaccaccgcgaagaccgccaccgcgaagacgactgcc
gcgcggtcggccgccgccacgaaggcggcggcgacgagggccgccaacaaggcggccgct
gccgcggcgacggcgtccgacgcgacgtga
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