Clavibacter seminis: KYT88_06215
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Entry
KYT88_06215 CDS
T11076
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
csei Clavibacter seminis
Pathway
csei03420
Nucleotide excision repair
csei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KYT88_06215
03430 Mismatch repair
KYT88_06215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csei03400
]
KYT88_06215
Enzymes [BR:
csei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KYT88_06215
DNA repair and recombination proteins [BR:
csei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KYT88_06215
MMR (mismatch excision repair)
Other MMR factors
KYT88_06215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Card1_endonuc
Motif
Other DBs
NCBI-ProteinID:
UKF26582
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All DBs
Position
1303691..1306912
Genome browser
AA seq
1073 aa
AA seq
DB search
MISARRIAEALDLPSPTEQQRRVIESPLEPGLVVAGAGSGKTETMASRVVWLLANGHVGV
EEILGLTFTRKAAGELGVRIRARIEQLQQAGLAAVPADAFATPTVQTYNAFANGIFRDSA
TLIGREAESVVLTEASAWQLARRLVVESTDPRLLELGRGVDPITQAVISLSRALSENVAD
PAEVVRLAGSFTGLAELPFGSARIRKAPAAEAVAAVGALPPLVDLAVRFQEEKTRRGLVE
YSDQVAFALAICERVPQVVAEHRKRFRVVLLDEYQDTSVVQTRLLSTLFGGTPVMAVGDP
HQSIYGWRGASAANLARFGADFAPAGASAADVPVYALSTSWRNPASVLGAANRIVEPLTA
ASRIPVAGLEPRPDAGDGRLDVAYEETVADEAAATAAWFADRLRQTGSDGRPRSAAMLCR
SLKTIEPFTTALADRGVPFRVLGLGGLLDQPAVVDLVCVLRVLHDPTAGSELVRLLTGAR
WRIGTKDVHALGRVASWLMSRDHAQKPLAEEVRDGLRASVVPDEVGSVVDALDFVVDARD
GHTALAGFSAEGLARLRAAGRQLQVLRSRVGLDLVDLVTVVQQELLLDIEVAANETDPLG
RASLEAFTEQVAGYLQGDSAGTLGPFLAWLAEAERRDNLAPRTEEPEPGTVQILTIHGSK
GLEWDVVAVPRMVDGELPGTLREKRGWVAFGALPFEFRGDSAELPSLAWRGALTQKEFAE
AMEAFGEELEERNAAEQRRLAYVAITRTRSDLLLSGSFWSTQQKPRGPGAFLREIQQVGL
IAPDALPEAPELEENPLEPGSARVAWPLPPLGPREARVRAAAEAVADADPDAKTVWTRDI
DLLLAERDARARDAELVDLPTRIPASRFKDFVSDPAGVAARLRRPMPERPYRQTRLGTLF
HGWVEARYGPAGTADVIDASGVELDADPTEPPVEQEDLDRLRGIFEASEWASRKPEEVEV
EIHMELAGQVVICKIDAVFLIDGRYRVVDWKTGRTPKDAADLELKQLQLALYRLAFAKWR
GIDPDLIDAEFYFVADDRSLKPERLYSEEDLVALWSGARTPESSRAPSGETVG
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgatcagcgcccgccgcatcgcggaggcgctcgacctgccgagccccaccgagcagcag
cggcgcgtcatcgagtcgccgctcgaacccggcctcgtggtcgcgggcgccggcagcggc
aagacggagaccatggcgagccgggtggtctggctactcgccaacgggcacgtgggggtc
gaggagatcctcgggctcaccttcacgcgcaaggcggcgggggagctcggggtgcggatc
cgcgcccgcatcgagcagctgcagcaggccgggctcgcggccgtgcccgcggacgcgttc
gccacgccgaccgtgcagacctacaacgcgttcgccaacggcatcttccgcgacagcgcc
accctcatcggccgcgaggcggagtcggtcgtgctcacggaggcgtccgcgtggcagctc
gcgcgtcggctcgtcgtcgagagcaccgacccgcggctgctcgagctgggccgcggggtg
gatccgatcacgcaggccgtcatctccctcagccgcgcgctgagcgagaacgtcgccgac
ccggccgaggtcgtgcgcctcgccggctcgttcacgggcctcgcggagctgccgttcgga
tccgcccgcatcaggaaggcgccggcggccgaggcggtcgccgccgtcggcgcgctgccg
ccgctcgtcgacctcgcggtgcggttccaggaggagaagacccggcgcgggctcgtggag
tacagcgaccaggtcgcgttcgcgctcgccatctgcgagcgcgtgccgcaggtcgtcgcc
gagcaccggaagcgcttccgcgtcgtgctgctcgacgagtaccaggacacctccgtcgtc
cagacccggctcctctcgaccctgttcggcggcacgcccgtcatggcggtgggggatccg
caccagtccatctacgggtggcgcggcgcgagcgcggcgaacctcgcgcgcttcggcgcc
gacttcgcacccgccggcgcatccgccgcagacgtgcccgtctacgcgctctccaccagc
tggcggaacccggcgtcggtgctcggcgcggcgaaccgcatcgtcgagccgctgaccgcg
gcctcccggatcccggtcgcgggcctcgagccccggcccgacgcgggcgacggccgcctc
gacgtcgcctacgaggagaccgtcgccgacgaggccgccgcgaccgccgcgtggttcgcc
gaccggctgcggcagaccggatccgacggccgcccccgctcggccgccatgctctgccga
tcactcaagaccatcgagccgttcaccacggcgctcgccgaccgcggcgtgccgttccgc
gtgctcggcctcggcggcctgctcgaccagcctgccgtggtggacctcgtgtgcgtcctc
cgcgtgctccacgaccccaccgcgggcagcgagctcgtgcggctcctcaccggcgcgcgc
tggcgcatcggcacgaaggacgtgcacgcgctcggacgcgtcgcctcctggctcatgtca
cgggatcacgcgcagaagccgctcgccgaggaggtgcgcgacggcctccgggcctccgtg
gtgccggacgaggtcgggtccgtcgtcgacgcgctcgacttcgtcgtcgacgcccgcgac
ggccacaccgcgctcgccgggttcagcgcggagggcctcgcgcgcctccgggccgccggg
cgccaactgcaggtgctgcgctctcgggtggggctcgacctggtcgacctcgtcacggtg
gtccagcaggagctgctgctcgacatcgaggtcgccgccaacgagacggatccgctcggc
cgcgcgagcctcgaggcgttcaccgagcaggtcgccggctacctccagggcgactccgca
ggcacgctcggcccgttcctcgcgtggctcgccgaagccgagcggcgcgacaacctggcg
ccgcgcaccgaggagccggagcccggaacggtgcagatcctcacgatccacggttccaag
ggcctcgagtgggacgtcgtggccgtgccgcgcatggtcgacggcgagctgcccggcacg
ctccgggagaagcgcggctgggtcgcgttcggcgccctgccgttcgagttccgcggcgac
tccgccgagctgccgtcgctcgcctggcgcggcgccctgacgcagaaggagttcgccgag
gcgatggaggcgttcggcgaggagctcgaggagcgcaacgccgcagagcagcggcgcctc
gcgtacgtcgcgatcacgcgcacgcgatccgacctgctgctgagcgggtcgttctggtcc
acgcagcagaagccgcgcggaccgggcgcgttcctccgcgagatccagcaggtcggcctc
atcgcacccgacgcgctgcccgaggcgcccgagctggaggagaaccccctcgagcccgga
tccgcgcgcgtcgcctggccgctgccgcctctcggcccgcgcgaggcccgcgtgcgcgcg
gccgccgaggccgtggccgatgcggatccggacgcgaagaccgtctggacccgcgacatc
gacctgctcctcgccgagcgtgacgcccgcgccagggacgccgagctcgtcgacctgccc
acgcgcatcccggcgtcccgcttcaaggacttcgtgagcgaccccgctggcgtcgccgcg
cgcctgcgccgccccatgcccgagcgcccgtaccggcagacccggctcggcacgctcttc
cacggctgggtcgaggcgcgctacggacccgcgggcacggccgacgtcatcgacgcgtcc
ggggtggagctcgacgcggatccgaccgagccgcccgtggagcaggaggacctcgaccgg
ctgcgcggcatcttcgaggcgagcgagtgggcctccaggaagccggaggaggtcgaggtc
gagatccacatggagctcgccggccaggtcgtcatctgcaagatcgacgcggtgttcctc
atcgacggccgctacagggtcgtcgactggaagaccggccggaccccgaaggacgcggcc
gacctcgagctcaagcagctccagctcgcgctctaccgcctcgcgttcgcgaagtggcga
ggcatcgaccccgatctcatcgacgccgagttctacttcgtcgcggacgaccgctctctg
aagccggagcggctctactccgaggaggacctcgtggcgctctggtcgggcgcgcgcacg
ccggagtcgtcgcgtgcgccgtcgggggagaccgtgggctga
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