Clavibacter seminis: KYT88_06230
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Entry
KYT88_06230 CDS
T11076
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
csei Clavibacter seminis
Pathway
csei03420
Nucleotide excision repair
csei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KYT88_06230
03430 Mismatch repair
KYT88_06230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csei03400
]
KYT88_06230
Enzymes [BR:
csei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KYT88_06230
DNA repair and recombination proteins [BR:
csei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KYT88_06230
MMR (mismatch excision repair)
Other MMR factors
KYT88_06230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
UKF26292
LinkDB
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Position
1309002..1310921
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AA seq
639 aa
AA seq
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MTDQLVPGTPGRDPYGSAASGALPAPVSLGPATASADEPVEEARTAESLLEALDDQQRLA
AEALLGPVVVLAGAGTGKTRAITHRIAYGIQAGVYPPNRVMALTFTSRAAAELRGRLREL
GAGPVAARTFHAAALKQLNFFWPQVVGGTMPRLIESKGRMLGHAAESLRLRLDTAALRDM
AAEVEWRKVSMISVEQYGLAARTTRPLPPQLDADQAVALLQAYEDIKDQRRQLDFEDVLL
ATAGMIEAEPWVAQQVREQYRFFVVDEYQDVSPLQQTILDLWMGDRRDLCVVGDASQTIY
SFAGAKSAYLLDFASRFPEATVVRLERNYRSTSGITEAANRLMRGRPGALTLVSADADPD
GDGTGTASPRAKGRGSAAVPGRGEGFRAPQVSAFPSDGAEARAIAGAIAQQIASGIAPED
IAVLYRMNGQSAVLEQALGDAGVSYQVRGSQRFFDRPEIKQALLALRGASVSISGEPLFK
SVSDVLRGLGWSQAPPEQPGAVRDRWESLDAIMGLAERMPAGSTFRAFTDELLERQAGQH
EPTVSAVTLATLHSAKGLEWEHVYLMGLSEGLVPISYAQTLEAVDEERRLLYVGITRARS
GLRLSWSRSGPHRSGQREPSRFLAELDTRIAGGGAKRGA
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaccagctcgtccccggcacgcccggacgcgacccctacgggtcggccgcgtcg
ggcgccctcccggcgcccgtctccctcggccccgcgactgcgtccgcagacgagcccgtc
gaggaggcccgcaccgccgagtccctgctcgaggcgctcgacgaccagcagcggctcgcc
gccgaggcgctcctcggccccgtcgtcgtgctcgcgggtgcaggcacgggcaagacgcgg
gccatcacgcaccgcatcgcgtacgggatccaggccggcgtctacccgcccaaccgcgtc
atggcgctgaccttcacgtcgcgcgccgcggcggagctccgcggccgcctgcgcgagctc
ggcgccggacccgtggccgcgcgcaccttccacgccgcggccctcaagcagctcaacttc
ttctggccgcaggtggtcggcggaacgatgccgcgcctcatcgagagcaaggggcggatg
ctcggccacgccgccgagtcgctccgcctccgcctcgacacggccgcgctccgcgacatg
gccgcggaggtcgagtggcgcaaggtctcgatgatctccgtcgagcagtacggcctcgcc
gcgcgcaccacgcgcccgcttccgccgcagctcgacgcggaccaggcggtcgcgctcctc
caggcctacgaggacatcaaggaccagcgccgccagctcgacttcgaggacgtgctgctc
gcgaccgcgggcatgatcgaggcggagccctgggtcgcgcagcaggtgcgcgagcagtac
cgcttcttcgtcgtcgacgagtaccaggacgtctcgccgctgcagcagacgatcctcgac
ctctggatgggcgaccgccgcgacctctgcgtggtcggcgacgccagccagaccatctac
tcgttcgcgggcgcgaagagcgcgtacctcctcgacttcgcgtcgcgcttccccgaggcg
acggtcgtgcggctggagcggaactaccggtcgacctcgggcatcaccgaggcggcgaac
aggctgatgcgcggccggcccggtgcgctgacgctcgtgtcggcggacgcggatccggac
ggcgacggcacgggcacggcttccccgcgcgcgaagggccgcggatccgccgccgtcccc
ggccgcggcgagggcttccgcgcgccgcaggtgagcgcgttcccgtccgacggcgccgag
gcgcgcgcgatcgcgggcgcgatcgcccagcagatcgcctcgggcatcgccccggaggac
atcgccgtgctgtaccgcatgaacggccagtccgcggtgctcgagcaggcgctcggcgac
gcgggcgtcagctaccaggtgcgcggatcccagcgcttcttcgaccgccccgagatcaag
caggctctcctggcgctccgcggcgcgtccgtctccatctccggcgagccgctgttcaag
tcggtgagcgacgtgctgcgcgggctcgggtggagccaggcgccgcccgagcagccgggc
gcggtgcgcgaccggtgggagtcgctcgacgccatcatgggcctcgccgagcggatgccc
gcgggcagcacgttccgcgccttcaccgacgagctgctcgagcggcaggcgggccagcac
gagccgaccgtctcggccgtcacgctcgcgacgctgcactccgccaagggcctcgagtgg
gagcacgtctacctgatggggttgagcgaggggctcgtgcccatcagctacgcgcagacg
ctcgaggcggtggacgaggagcggcgcctcctctacgtggggatcacgcgcgcgcgatcc
gggctccggctgtcgtggagccggagcggaccgcatcgatcggggcagcgggagccgtcg
cggttcctggcagagctcgacacccgcatcgcgggtgggggcgcgaagcgcggcgcgtga
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