Clavibacter seminis: KYT88_06355
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Entry
KYT88_06355 CDS
T11076
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
csei Clavibacter seminis
Pathway
csei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KYT88_06355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csei03019
]
KYT88_06355
03009 Ribosome biogenesis [BR:
csei03009
]
KYT88_06355
Enzymes [BR:
csei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KYT88_06355
Messenger RNA biogenesis [BR:
csei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KYT88_06355
Ribosome biogenesis [BR:
csei03009
]
Prokaryotic type
rRNA helicases
KYT88_06355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
adh_short
HEM4
Cas3-like_C_2
AAA_22
HTH_CLF_N
UvrA_inter
AIRS_C
Motif
Other DBs
NCBI-ProteinID:
UKF26315
UniProt:
A0ABY3TDR7
LinkDB
All DBs
Position
complement(1335739..1337499)
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AA seq
586 aa
AA seq
DB search
MSTDDTASTPDADAAPRTTFSDLGLSDQVLKALKDVGYETPSAIQAATIPSLLSGRDVLG
VAQTGTGKTAAFALPILSNLDVSQKTPQALVLAPTRELALQVCEAFERYASGMRGVHVLP
VYGGQGYGVQLSALRRGVHVVVGTPGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAE
DVETILADTPKSKQIALFSATMPAQIRRISGKYLQDPEEITVKNKTTTSANTTQRYLMVS
YPQKVDALTRILETENFEGMIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTV
EQLKSGKLDILVATDVAARGLDVDRISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISF
VTPRERRLLTAIEKATRQPLTEMRMPSAEDVNVTRLSRFDDAITAALADRERLDAFRDIV
GHYVNHHDVVESDVAAALAIVAQGDTPLLLSADDLRPPRVERERRDDRPGRDGDDRGERR
ARPARGSGNMATYRIDVGRRHRVEPRQIVGALANEGGFSREDFGHIDIRPDFSLVELPAG
LPQDRIDKLASTVINGRPIDIRPDRGGPRAAERGAAPERRGRKPRD
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgacgacaccgcatccacccccgacgcggacgccgccccccgcacgaccttc
agcgacctcggtctctccgaccaggtgctcaaggcactcaaggacgtgggctacgagacg
ccctccgcgatccaggcggccacgatcccctccctcctctccggccgcgacgtcctcggc
gtcgcccagaccggcaccggcaagacggccgcgttcgcgctgccgatcctctccaacctc
gacgtgtcccagaagaccccgcaggccctcgtgctcgcgcccacccgcgagctcgccctc
caggtgtgcgaggcgttcgagcgctacgcgtcgggcatgcgcggcgtgcacgtgctgccc
gtctacggcggccagggctacggcgtgcagctgtccgcgctccgccgcggcgtgcacgtg
gtcgtcggcacccccggccggatcatggaccacctcgacaagggcacgctcgacctctcg
cagctgaagttcctcgtgctcgacgaggccgacgagatgctcaagatgggcttcgccgag
gacgtggagacgatcctcgcggacaccccgaagtcgaagcagatcgcgctgttctcggcg
accatgcccgcgcagatccgccgcatctcgggcaagtacctgcaggaccccgaggagatc
acggtcaagaacaagaccacgacctccgcgaacaccacgcagcggtacctgatggtgtcc
tacccgcagaaggtcgacgccctcacgcgcatcctcgagaccgagaacttcgagggcatg
atcgtgttcgtccgcacgaagaacgagacggagacgctcgccgagaagctccgcgcccgc
ggctacgcggcggccgccatctcgggcgacgtcgcgcaggcgcagcgcgagcgcacggtc
gagcagctgaagtccggcaagctcgacatcctcgtcgccaccgacgtcgcggcccgcggc
ctcgacgtcgaccggatcagccacgtcgtcaactacgacatccccatcgacaccgagtcg
tacgtccaccgcatcgggcgcacgggccgcgccggccgcagcggcgccgcgatcagcttc
gtcacgccgcgcgagcgccgcctcctcaccgccatcgagaaggccacgcgccagccgctc
accgagatgcgcatgccgagcgccgaggacgtcaacgtcacgcgcctctcccgcttcgac
gacgcgatcaccgcggccctcgccgaccgcgagcgcctggacgcgttccgcgacatcgtg
ggccactacgtgaaccaccacgacgtcgtcgagtccgacgtggccgccgcgctcgccatc
gtggcgcagggcgacaccccgctcctcctctcggccgatgacctccgcccgccgcgcgtg
gagcgcgagcgccgcgacgaccgcccgggccgcgacggcgacgaccgcggcgagcgtcgc
gcccgtcctgcgcgcggcagcggcaacatggcgacgtaccgcatcgacgtcggccgccgc
caccgcgtcgagccacgccagatcgtcggcgcgctcgccaacgagggcggcttcagccgc
gaggacttcggccacatcgacatccgcccggacttctcgctcgtcgagctgccggcgggt
ctgccgcaggaccggatcgacaagctcgcgagcacggtcatcaacggccgcccgatcgac
atccgccccgaccgcggcggcccgcgtgccgccgagcgcggtgcggcccccgagcgtcgc
gggcggaagccgcgcgactga
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