Clavibacter seminis: KYT88_07045
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Entry
KYT88_07045 CDS
T11076
Symbol
rnc
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
csei Clavibacter seminis
Pathway
csei03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
csei00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
KYT88_07045 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csei03019
]
KYT88_07045 (rnc)
03009 Ribosome biogenesis [BR:
csei03009
]
KYT88_07045 (rnc)
03036 Chromosome and associated proteins [BR:
csei03036
]
KYT88_07045 (rnc)
Enzymes [BR:
csei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
KYT88_07045 (rnc)
Messenger RNA biogenesis [BR:
csei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KYT88_07045 (rnc)
Ribosome biogenesis [BR:
csei03009
]
Eukaryotic type
90S particles
RNase
KYT88_07045 (rnc)
Prokaryotic type
rRNA processing factors
KYT88_07045 (rnc)
Chromosome and associated proteins [BR:
csei03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
KYT88_07045 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
DSRM_2
DND1_DSRM
Motif
Other DBs
NCBI-ProteinID:
UKF26448
UniProt:
A0ABY3TFN1
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All DBs
Position
1479455..1480171
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AA seq
238 aa
AA seq
DB search
MTDTQGSRVHGDRDALRRLLAVDVSPELLELALTHRSYAYEHGGIPHNERLEFLGDSILG
QAVTVMLYLENPDLDEGELAKRRASLVSSVALAEVATRIGLGKHLLLGRGEELTGGRAKS
SILADTVEAIIGASYLDAGGEAATGLVLRLIAPLLEDPARFGAAMDPKTALQETAARQGL
PAPVYDVSDSGPDHSKRFHAVVTVGDAVRTTGEGSSKKQAEMTAALEAWTRLEARTTA
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacacccagggatcccgcgtccacggcgaccgcgacgcgctccggcgcctcctc
gccgtggacgtgagccccgagctcctcgagctcgcgctcacccaccgctcgtacgcgtac
gagcacggcggcatcccgcacaacgagcgcctcgagttcctcggcgactccatcctcggg
caggccgtcacggtcatgctctacctcgagaaccccgacctcgacgagggcgagctcgcc
aagcggcgcgcgagcctcgtctcgagcgtcgccctcgcggaggtcgccacgcgcatcggg
ctcggcaagcacctgctgctcggccgcggcgaggagctcacgggcggccgcgccaagtcg
tcgatcctcgccgacacggtcgaggccatcatcggggcctcgtacctcgacgccggggga
gaggccgcgaccggtctcgtgctccgcctcatcgcgccgctcctggaggacccggcgcgc
ttcggcgccgccatggatccgaagaccgcgctccaggagaccgccgcgcgccagggcctg
cccgcacccgtctacgacgtgagcgacagcggtcccgaccacagcaagcgcttccacgcc
gtcgtcaccgtcggcgacgccgtccgcacgacgggcgagggatccagcaagaagcaggcc
gagatgacggccgcgctcgaggcgtggacccgcctcgaggcgcgcaccacggcctga
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