Clavibacter seminis: KYT88_08765
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Entry
KYT88_08765 CDS
T11076
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
csei Clavibacter seminis
Brite
KEGG Orthology (KO) [BR:
csei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csei03019
]
KYT88_08765
Enzymes [BR:
csei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KYT88_08765
Messenger RNA biogenesis [BR:
csei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KYT88_08765
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
AAA_22
DUF6634
nSTAND3
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
UKF23827
UniProt:
A0ABY3T7C2
LinkDB
All DBs
Position
complement(1852718..1855189)
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AA seq
823 aa
AA seq
DB search
MTDQLSPAERYAASRTRRSLPLLESFASGLRFDLDPFQRAAAESLENGRSVLVAAPTGAG
KTIVAEFAVYLAMQRPSAKIFYTAPMKALSNQKYAELVAEYGPDEVGLLTGDTNVNSRAR
IVVMTTEVLRNMLYADSDLLRDLAFVIMDEVHYLADRFRGAVWEEVIIHLPQTVRMISLS
ATVSNAEEFGDWLQAVRGETDVIVSEERPVPLEQHVIVRHRMVDLFDSSGLAATHRVNPE
LVRMTHGGGREAVRVRGGQGHSRGRTGAVGGSGKRAPGPWDRGRMDRPEVVALLEERNLL
PAIFFIFSRAGCDAAVKQVLRAGVRLTHAHERDEIRAVVEERCRTLRDEDLAVLGYWEWL
EGLERGVAAHHAGMLPAFKEVVEELFQRKLVKAVFATETLALGINMPARTVVLEQLEKFN
GEARVPLTPGEYTQLTGRAGRRGIDVEGHAVIQWKDGLDPQAVASLASRRTYPLNSSFRP
TYNMAVNLIDQFGRERTREVLESSFAQFQADRAVVDLARKVRTQEESLAGYEKAMVCHLG
DFREYSGLRRELSDLERATAARADMQQPGQHGERDKRQRQLTDLRRRMKAHPCHACKDRE
SHARWAERWWRLKRQTDALGQQIRTRTNAVAKVFDRVTELLLSLGYLKRATDGQVAPTPN
GRMLKRIYGDRDLLIAECLRTQVWVDLDPAALAAMAASLVYQPRRDEGDRNDRNLPRGAF
RAALERTEEIWSRLDDVERERRLPTTDPLSTGLCAPMHRWARGGSLDAVLDEADLAAGDF
VRWTKQTIDLLDQLSVVADGPVSRNARTALDSIRRGIVAYSSV
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
gtgacagaccagctctcgcccgccgaacgctacgcggcctcccgcacccgccgcagcctc
ccgctcctcgagtcgttcgcgagcggcctgcgcttcgacctcgaccccttccagcgcgcc
gccgcggagtcgctggagaacgggcgcagcgtcctcgtcgcggcgccgacgggcgcgggg
aagacgatcgtggccgagttcgcggtgtacctcgcgatgcagcggccgagcgccaagatc
ttctacacggcgccgatgaaggcgctcagcaaccagaagtacgccgagctcgtggccgag
tacgggccggacgaggtgggcctgctcacgggcgacaccaacgtcaacagccgcgcgcgc
atcgtcgtcatgacgaccgaggtgctccgcaacatgctctacgcggactccgacctgctc
cgcgacctcgccttcgtgatcatggacgaggtgcactacctggccgaccgcttccgcggc
gccgtgtgggaggaggtcatcatccacctcccgcagaccgtccggatgatctcgctgagc
gcgaccgtgtccaacgccgaggagttcggggactggctgcaggccgtccgcggcgagacg
gacgtcatcgtctccgaggagcgacctgtgcccctcgagcagcacgtcatcgtgcggcac
cgcatggtcgacctcttcgactcgtcgggcctcgcggcgacgcaccgcgtgaaccccgag
ctcgtccgcatgacgcacggcggaggtcgcgaggccgtccgtgtgcgcggcggccagggt
cactcccggggccggacgggggcggtcggcggatccggcaagcgggcacccggcccctgg
gaccgcggccgcatggaccgtcccgaggtcgtcgccctcctcgaggagcggaacctcctg
cccgccatcttcttcatcttcagccgcgcggggtgcgacgcggccgtcaagcaggtgctg
cgcgccggcgtccgtctcacgcacgcgcacgagcgcgacgagatccgcgccgtcgtggag
gaacgctgccgaaccctccgggacgaggacctcgccgtcctcggctactgggagtggctc
gagggcctggagcgcggggtcgccgcgcaccacgcgggcatgctgccggcgttcaaggag
gtcgtcgaggagctcttccagcgcaagctcgtgaaggccgtgttcgccacggagacgctc
gcgctcggcatcaacatgcccgcgcgcacggtcgtgctcgagcagctcgagaagttcaac
ggcgaggcgcgcgtgccgctgacgccgggggagtacacgcagctcacgggacgcgcgggc
cgacgcggcatcgacgtcgagggccacgcggtcatccagtggaaggacgggctggatccc
caggccgtcgcctccctcgcgtcgcggcgcacctacccgctcaactcgagcttccggccc
acctacaacatggccgtcaacctcatcgaccagttcggtcgtgagcggacccgcgaggtg
ctcgagtcgtcgttcgcgcagttccaggccgatcgcgcggtcgtcgacctcgcgcgcaag
gtgcgcacgcaggaggagtcgctcgcggggtacgagaaggcgatggtctgccacctcggc
gacttccgcgagtactcgggcctccgccgcgagctcagcgacctcgagcgcgcgaccgcg
gcccgcgccgacatgcagcagccgggccagcacggggagcgcgacaagcggcagcgccag
ctgaccgacctccgtcgccggatgaaggcgcacccctgccacgcctgcaaggaccgcgag
tcccacgcgcgctgggcggagcgctggtggcgcctcaagcggcagacggatgcgctcggc
cagcagatccgcacccgcaccaacgcggtcgcgaaggtcttcgaccgcgtcaccgagctg
ctgctctcgctcggctacctcaagcgcgccacggacggccaggtcgcgccgacgcccaac
ggccggatgctcaagcgcatctacggcgaccgcgacctcctcatcgcggagtgcctgcgc
acgcaggtctgggtggacctcgatcccgcggccctcgccgccatggccgcctctctcgtc
taccagccgcgccgtgacgagggcgatcgcaacgaccggaacctgccgcgaggagcgttc
cgcgcggcgctcgagcgcacggaggagatctggtcgcgcctcgacgacgtggagcgcgag
cgccgactgccgacgacggatccgctctcgaccggcctgtgcgcgccgatgcaccgctgg
gcgcgcggcggcagcctcgacgccgtgctcgacgaggccgacctcgcggccggcgacttc
gtgcgctggacgaagcagaccatcgacctcctggaccagctgtccgtcgtggccgacgga
cccgtctcccggaacgcgcgcacggcgctcgacagcatccggcgcggcatcgtcgcgtac
tcctcggtgtga
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