Clavibacter seminis: KYT88_09635
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Entry
KYT88_09635 CDS
T11076
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
csei Clavibacter seminis
Pathway
csei03030
DNA replication
csei03430
Mismatch repair
csei03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KYT88_09635 (dnaE)
03430 Mismatch repair
KYT88_09635 (dnaE)
03440 Homologous recombination
KYT88_09635 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csei03032
]
KYT88_09635 (dnaE)
03400 DNA repair and recombination proteins [BR:
csei03400
]
KYT88_09635 (dnaE)
Enzymes [BR:
csei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KYT88_09635 (dnaE)
DNA replication proteins [BR:
csei03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KYT88_09635 (dnaE)
DNA repair and recombination proteins [BR:
csei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KYT88_09635 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
HROB
Motif
Other DBs
NCBI-ProteinID:
UKF23990
LinkDB
All DBs
Position
complement(2033858..2037370)
Genome browser
AA seq
1170 aa
AA seq
DB search
MPRNDSFVHLHVHSEYSMLDGAARVGPLVQAAAEQRMPAVAITDHGNVFGAFDFWKQAKA
AGVKPIIGTEAYITPGTHRGDRTRIRWGNGGQDDVSGSGAYTHLTMLAETTEGMHNLFRL
SSRASLEGYYFKPRMDRELLSTYAKGLIATTGCPSGEVQTRLRLGQYDEAVKAAADFRDI
FGAENYFCEVMDHGLGIERRIMTDLHRLAKDLGLPLVATNDLHYTHEHDATSHAALLCVQ
SGTTLDDPNRFKFDADEFYLKTAQQMRHLFRDHEEACDNTLLIAERCDVQFNESANYMPR
YPVPEGESEQTWFVKEVERGLVRRYPRGFSDDVRKRADYEVGVIAQMGFPGYFLVVADFI
NWSKENGIRVGPGRGSGAGSMVAYAMGITDLDPLEHGLLFERFLNPDRVSMPDFDVDFDD
RRRGEVIRYVTDKYGDERVAQIVTYGTIKAKQALKDSSRVLGYPFSMGDKLTKAMPPAIM
GKDIPLSGILDTDHPRYREAGDFREVLAMDPEAQKVFETAQGIENLKRQWGVHAAGVIMS
SEPLIDIIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIIDDALNNIESNRGE
KLVLEDLGLDDQGAYDLLARGDTLGVFQLDGGPMRSLLRMMKPDNFEDISAVIALYRPGP
MGANSHTNYALRKNGLQEITPIHPELEEPLREVLGTTHGLIVYQEQVMSVAQKLAGFTLA
QADLLRRAMGKKKKSELDKQFEGFSQGMKDNGYSMAAVKALWDILLPFSDYAFNKAHSAA
YGVVSYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGIKVLPPDVNESIGFF
AAAGADIRFGLGAVRNVGANVVEALRGARTEQGAFESFDDFLKKVPLPVANKRTVESLIK
AGAFDSLGDTRRALLEVHEGMIDASVSDKRAAMNGQVGFDFDSLWDEPQHARKVPERPEW
AKRDKLAFEREMLGLYVSDHPLAGLEIPLAKLASTGIAELLATDASMDGETVTLAGLLTS
VQHRTARNSGNQYGMVQLEDFGGEITCMFMGKAYQEFAPALQSDTVVVIRGRVSTRDDGM
NIHAFSMFQPDLGQSLGSGPLLISLAENRATTETVMGLNDVLIRHSGDTEVRLQLVKGDS
GRVFEIPYPVTVSADLYGELKSLLGPNCLG
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
gtgccccgcaacgactcgttcgtccacctccacgtccacagcgagtactcgatgctcgac
ggggcggcccgcgtcggcccgctcgtgcaggccgcggccgagcagaggatgccggccgtg
gcgatcaccgaccacggcaacgtgttcggcgcgttcgacttctggaagcaggcgaaggcc
gcgggcgtcaagcccattatcggcacggaggcgtacatcacgccgggcacgcaccgcggc
gaccgcacccgcatcaggtggggcaacggcggccaggacgacgtctccggatccggtgcc
tacacgcacctcacgatgctcgccgagacgacggagggcatgcacaacctcttccgcctc
tcgtcgcgcgcctcgctcgagggctactacttcaagccccgcatggaccgcgagctgctc
agcacctacgcgaagggcctcatcgccaccaccggctgcccgtccggcgaggtgcagacg
cgcctccgcctcgggcagtacgacgaggccgtgaaggccgcggcggacttccgcgacatc
ttcggggcggagaactacttctgcgaggtcatggaccacgggctcggcatcgagcgccgg
atcatgaccgatctgcaccggctcgcgaaggacctcggcctcccgctcgtcgccacgaac
gacctgcactacacgcacgagcacgacgcgacgagccacgcggcgctcctgtgcgtccaa
tccggcaccacgctcgacgaccccaaccgcttcaagttcgacgccgacgagttctacctc
aagaccgcgcagcagatgcgccacctcttccgcgaccacgaggaggcgtgcgacaacacg
ctgctcatcgccgagcggtgcgacgtgcagttcaacgagtccgcgaactacatgccgcgc
tatccggtgcccgagggcgagagcgagcagacctggttcgtcaaggaggtcgagcgcggc
ctcgtgcgccggtacccgcgtgggttctcggacgacgtgcgcaagcgcgccgactacgag
gtcggggtcatcgcgcagatgggcttcccgggctacttcctcgtcgtcgccgacttcatc
aactggtcgaaggagaacgggatccgcgtgggccccggccgcggctcgggcgccgggtcg
atggtcgcgtacgccatgggcatcaccgatctcgacccgctggagcacggcctgctcttc
gagcggttcctcaaccccgaccgcgtctccatgcccgacttcgacgtcgacttcgacgac
cgtcgccgcggcgaggtcatccgctacgtgaccgacaagtacggcgacgagcgggtggcg
cagatcgtcacgtacggcaccatcaaggccaagcaggcgctcaaggactccagccgtgtg
ctcggctacccgttctccatgggcgacaagctcaccaaggccatgccgcccgcgatcatg
ggcaaggacatcccgctgtccggcatcctcgacaccgaccacccgcggtaccgcgaggcc
ggtgacttccgcgaggtgctcgcgatggatcccgaggcgcagaaggtcttcgagaccgcg
caggggatcgagaacctcaagcgccagtggggcgtgcacgctgccggcgtcatcatgtcg
agcgagccgctcatcgacatcatcccgatcatgaagcgggagcaggacggccagatcgtc
acgcagttcgactaccccgcgtgcgagtcgctcggcctcatcaagatggacttcctgggg
cttcgcaacctcacgatcatcgacgacgcgctcaacaacatcgagtccaaccgcggcgag
aagctcgtgctcgaggacctgggcctcgatgaccagggcgcgtacgacctgctggcccgt
ggggacacgctgggcgtcttccagctcgacggcgggcccatgcgctcgctcctgcgcatg
atgaagccagacaacttcgaggacatctccgccgtcatcgcgctctaccggccgggcccc
atgggcgcgaactcgcacaccaactacgcgctgcggaagaacgggctgcaggagatcacc
ccgatccatccggagctcgaggagccgcttcgcgaggtcctcggcaccacgcacggcctc
atcgtctaccaggagcaggtgatgtcggtggcgcagaagctcgcgggcttcacgctcgcg
caggccgacctcctccgacgcgcgatgggcaagaagaagaagtcggagctggacaagcag
ttcgagggcttctcgcagggcatgaaggacaacggctactcgatggccgcggtcaaggcc
ctctgggacatcctgctgccgttctccgactacgccttcaacaaggcgcactccgcggcc
tacggcgtcgtctcctactggaccgcgtacctcaaggcgcactacccggccgagtacatg
gccgcgctcctcacgagcgtcggcgactccaaggacaagatggcgctctacctcaacgag
tgccgccgcatggggatcaaggtgctcccgccggacgtcaacgagtcgatcggcttcttc
gcggcagccggcgccgacatccgcttcggcctgggcgccgtccggaacgtcggcgcgaac
gtcgtcgaggcgctccgaggcgcccgcaccgagcagggcgcgttcgagtcgttcgacgac
ttcctcaagaaggtgccgctgccggtcgcgaacaagcgcacggtcgagtcgctcatcaag
gccggcgcgttcgactcgctgggcgacacccgccgagcgctgctcgaggtgcacgagggc
atgatcgacgcgtcggtcagcgacaagcgcgcggcgatgaacggccaggtcggcttcgac
ttcgacagcctgtgggacgagccgcagcacgcgcggaaggtgcccgagcggccggagtgg
gcgaagcgcgacaagctcgccttcgagcgggagatgctcggcctctacgtctccgaccac
ccgctggccgggctcgagatcccgctggcgaagctcgcctccacgggcatcgccgagctg
ctcgcgaccgacgcatcgatggacggcgagacggtcaccctggcgggcctcctcacgagc
gtgcagcaccgcaccgcccgcaactccggcaaccagtacggcatggtgcagctcgaggac
ttcggcggcgagatcacctgcatgttcatgggcaaggcgtaccaggagttcgcgccggcc
ctgcagagcgacaccgtcgtggtgatccgcggccgggtctccacgcgcgacgacggcatg
aacatccacgccttctcgatgttccagcccgacctcgggcagagcctcgggtccggcccg
ctgctcatcagcctcgcggagaaccgggcgacgacggagaccgtcatgggcctcaacgac
gtgctcatccgccactcgggcgacaccgaggtgcggctgcagctcgtcaagggcgacagc
gggcgcgtgttcgagatcccgtacccggtcacggtgagcgccgacctctacggcgagctg
aagtcgctgctcgggccgaactgcctggggtga
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