Clavibacter seminis: KYT88_12725
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Entry
KYT88_12725 CDS
T11076
Name
(GenBank) 3'-5' exoribonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
csei Clavibacter seminis
Pathway
csei03030
DNA replication
csei03430
Mismatch repair
csei03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KYT88_12725
03430 Mismatch repair
KYT88_12725
03440 Homologous recombination
KYT88_12725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csei03032
]
KYT88_12725
03400 DNA repair and recombination proteins [BR:
csei03400
]
KYT88_12725
Enzymes [BR:
csei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KYT88_12725
DNA replication proteins [BR:
csei03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KYT88_12725
DNA repair and recombination proteins [BR:
csei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KYT88_12725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
PTCB-BRCT
BRCT
Rv2179c-like
SEC-C
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
UKF24575
UniProt:
A0ABY3T8R9
LinkDB
All DBs
Position
complement(2695487..2696710)
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AA seq
407 aa
AA seq
DB search
MAHGGYAVIDFETTGLSPAHHHRIIEVGVVHVAPDGTMEDSFETVINPSRDLGPTHIHRL
RGADVRDAPSFAAVSGRLVELLRGRVLVAHNARFETTFLRAEMARLGLRSPVDDDGALCT
MKLAGTYLPGSGRKLADCCAAYDITLEDAHEALADARATAQLLSAYLDADQDDRRWWEQW
GDFAARAPWPAPAHPAADWLARSRGGTAVSTPELLDRATDHAAPLAGSHAEIAYAGMLDQ
ALADGYLSLDESDQLHELARSVGLGDRARRDLQTRYFSALVDAAWRDGVLSPSERRQISA
VGTMLDVPSSAREEALRVPRMAEVRAEPRTRRIGAGDVVVLTGEMSQTREQLEQRVMATG
AQVARAVTKKTTLLVAADPDSLSGKAQKARQYGIQIVDEPSLLVLMG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcccacggcggatacgcggtgatcgacttcgagacgaccgggctctccccggcgcac
catcatcggatcatcgaggtcggcgtcgtgcacgtcgcgccggacggaaccatggaggac
tccttcgagacggtcatcaacccgtcgagggacctcgggcccacgcacatccatcgcctg
cggggcgccgatgtgcgggatgcgccgtcgttcgccgcggtctcgggacgcctcgtcgag
ctgctccgaggacgtgtgctcgtcgcgcacaacgcccggttcgagacgacgttcctccgc
gcggagatggcccgcctcgggctgaggtcgcccgtcgacgatgacggggcgttgtgcacc
atgaagctggcgggtacgtacctcccgggctccggccgcaagctggccgactgctgcgcc
gcgtacgacatcacgctcgaggacgcgcatgaggcgctggccgatgcccgtgccaccgcg
cagctgctctcggcctacctcgacgccgatcaggacgaccgtcggtggtgggagcagtgg
ggtgacttcgccgcgcgtgccccgtggccggctccggcgcatcccgcagcggattggctc
gcgcggtcgcgcgggggaacggcggtctccacgcccgagctcctcgatcgggcgacggat
catgccgcgccgttagcgggaagccatgccgagatcgcgtacgccgggatgctcgaccag
gcgctcgccgacggctacctgtccctcgacgagtcggaccagctgcacgagctcgcccgg
tccgtgggcctcggcgaccgagcacgcagggatctgcagacgcgctacttctcggccctc
gtcgacgcggcatggagggatggcgtgctctcgccttccgaacgccggcagatctccgcc
gtggggacgatgctcgacgtcccgtcgtcagccagggaggaggcgctgcgcgtgccccgc
atggccgaggtccgtgcggagccgcggacgcggcgcatcggagcgggcgacgtggtggtg
ctgacgggtgagatgtcgcagacgcgtgagcagctcgagcagcgcgtgatggcgacggga
gcccaggtcgctcgcgccgtgacgaagaagacgactctgctggtcgcggcggacccggac
agtctgtcgggcaaggctcagaaggccaggcagtacgggatacagatcgtggatgagccg
tccttgctcgtgttgatgggctga
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